| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,744,473 | C→T | A67T (GCT→ACT) | apt ← | Adenine phosphoribosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,744,473 | 0 | C | T | 98.5% | 441.4 / NA | 136 | A67T (GCT→ACT) | apt | Adenine phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (65/69); minor base A (2/0); total (67/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 136 total aligned reads displayed.
AACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑CTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCTTGAAAC > USA300TCH1516_ALE/1744328‑1744616 | acGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGa > 1:928448/1‑148 (MQ=255) acGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGa > 2:375594/1‑148 (MQ=255) cGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGAc < 2:736074/148‑1 (MQ=255) ttGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGGACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAg < 1:385327/148‑1 (MQ=255) tGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCAAACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGc < 1:1025833/148‑1 (MQ=255) ccTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTAAATAAG‑TTACAGGCCATccca > 1:1171662/1‑146 (MQ=255) ccTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTACCTTCTTTTCTACCAGGTGGAAAGCCAATCCCCATTGCATAAG‑TTACAGGAGAGCCaa > 2:475017/1‑148 (MQ=255) ccTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCAAGAGGTAATTTCCCCTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCaa < 2:924647/148‑1 (MQ=255) tGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACACATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAACGCCAATCCCCATTGAATAAG‑TTCCAGGACAGCCAATg > 2:1039790/1‑148 (MQ=255) tGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATGCTAGGTCATACTCATAACGAATGACCTCACGAGGTACTTTCCCTTCTTTTCTCGCAAGTGCCCAGCCACTCCCGATTGAATAAG‑TTACAGGACAGCCAATg < 2:302540/148‑1 (MQ=255) ttACTTGCATCTTTGGGCATTGTTAAAACATTTGCACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCGTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATaa < 1:1072235/148‑1 (MQ=255) ttAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATaa < 1:762853/148‑1 (MQ=255) ttAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATaa < 1:1098675/148‑1 (MQ=255) aTTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCCTACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGc < 1:1321161/148‑1 (MQ=255) aTTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGc < 1:500780/148‑1 (MQ=255) cATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGCCTTCACGAGGTAATTTCCCTTCTTTTCTGACAGGTGCAAAACCACGCCCCATTAGATAAG‑TTACAGCGCAGCCAATGATAAAGacaca > 2:1102564/1‑147 (MQ=255) cATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCAcg > 1:1289339/1‑148 (MQ=255) cATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCAcg > 1:657196/1‑148 (MQ=255) tttGTGCATGGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAT‑TTACAGGACAGCCAATTATAAAGCCACGCGCt < 1:896389/148‑1 (MQ=255) ttGTGCATTGTTAAAACATTTGTCCCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTGCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCtt > 2:823000/1‑148 (MQ=255) ttGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACCCGCtt > 2:1016884/1‑148 (MQ=255) gtgCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCa < 1:869403/148‑1 (MQ=255) cATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGt < 2:31074/148‑1 (MQ=255) aTTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATATCGAATGATTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTc < 2:396472/148‑1 (MQ=255) aTTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTc < 2:396291/148‑1 (MQ=255) gTTACAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTa < 1:1059387/148‑1 (MQ=255) gTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTa < 2:270191/148‑1 (MQ=255) tAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCAAATGATAAAGCCACGCGCTTCAGGTCCTACa > 2:791939/1‑148 (MQ=255) aaaCATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAAc < 2:453936/148‑1 (MQ=255) aCATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGa < 1:868728/148‑1 (MQ=255) cATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGat > 1:986430/1‑148 (MQ=255) atatTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATAGCAACAtct > 2:983014/1‑148 (MQ=255) ttCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGACCATGATAAAGCCACGCGCTTCAGGTCCGACAACGATATCAACATCACTg > 2:1312397/1‑148 (MQ=255) tCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACACGCAAGCCAATGGTATAGCGCCGCGCTTCAGATCCTACAACCATATCAACATCTCTgc > 2:145849/1‑147 (MQ=255) cTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTc > 1:840433/1‑148 (MQ=255) tAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCt < 1:541300/148‑1 (MQ=255) tAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCt > 1:1191451/1‑148 (MQ=255) tAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCt > 2:950970/1‑148 (MQ=255) aGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTAATCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTCCAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCtt > 1:745346/1‑148 (MQ=255) ggTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGCTATCAACATCTCTGTCttt > 2:410465/1‑148 (MQ=255) aTACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCg < 1:15974/148‑1 (MQ=255) tACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGt > 1:524838/1‑148 (MQ=255) aCTCATAACGAATGACTTCACGAGGGAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTa < 1:591101/148‑1 (MQ=255) cTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTAt > 1:146142/1‑148 (MQ=255) cTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTGCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTAt > 2:376554/1‑148 (MQ=255) tCATAACGAATGACTTCACGAGGTAAGTGCCCGTCTTTTCTAACAGGTGCAGAGCCAAGCCCCATGGAATAAG‑TTACAGTACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTGTGCGTAtt < 2:112393/148‑1 (MQ=255) cATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTTTTc > 1:100067/1‑148 (MQ=255) cATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTc > 1:727433/1‑148 (MQ=255) aaCGAATGACTTAACGAAGAAAATGCCCTTCTTTTCTAACAGAGTCAAACCCAAT‑CTTGTTCTATCGGTATCCATTACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCACCATCTCTGTCTTTTGCGTATTCTAc > 2:641708/1‑148 (MQ=255) aCGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTTCAACGATATCAACATCTCTGTCGTTTCCGTATTCTaaa > 1:374076/1‑146 (MQ=255) aCGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACa > 1:1065523/1‑148 (MQ=255) aCGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACa > 2:1103792/1‑148 (MQ=255) aCGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACa > 1:812585/1‑148 (MQ=255) aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATACG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTGTTGCGGTTACTACAAtat > 1:140476/1‑146 (MQ=255) aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAAttt > 2:1333772/1‑148 (MQ=255) aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCGGTCTTTTCCGTATTCTACAAttt > 1:552908/1‑148 (MQ=255) aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAAGTGCAAAGCCACTCCCCATTGAATAAG‑TGACAGGACAGCCAATCATAAAGCCACGCGCTTCCGGTCCTACACCGATATCAACATCTCTGTCTTTTGCCTATTCTCCCAttt > 1:296612/1‑148 (MQ=255) cTTCACGAGGTAATTGCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATGGTACAATTTTATc > 1:878136/1‑148 (MQ=255) ttCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCTATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCACTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCTTATTTTACAATTTTATCt > 2:668815/1‑148 (MQ=255) cGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTg < 1:1353374/148‑1 (MQ=255) aaTTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGc > 2:554036/1‑148 (MQ=255) aaTTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGc < 1:492285/148‑1 (MQ=255) aaTTTCCCTTCTTGTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGc < 2:480585/148‑1 (MQ=255) aTTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGcc < 2:986430/148‑1 (MQ=255) ttCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTTCAATTTTATCTGTTGCATAGCCat > 2:72405/1‑148 (MQ=255) tCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCata > 2:169317/1‑148 (MQ=255) ttcttTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCt > 2:1170387/1‑148 (MQ=255) ttcttTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCt > 2:251532/1‑148 (MQ=255) tcttTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTGATCTGTTGCATAGCCATATGCtt < 1:642159/148‑1 (MQ=255) cttTTCTAACAGGGGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTc < 1:429148/148‑1 (MQ=255) ctattCAAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTGTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTc < 1:300777/145‑1 (MQ=255) tttCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCAc > 1:1324334/1‑148 (MQ=255) aCAAGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTAt < 1:1206256/148‑1 (MQ=255) cAGGTGCAAAGCGAATCCCCATTGAATAAG‑TTACAGGACAACCAATGAAAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATc > 1:1008094/1‑148 (MQ=255) cAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATc < 1:950970/148‑1 (MQ=255) cAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATc < 1:1280675/148‑1 (MQ=255) cAGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATc < 2:501668/148‑1 (MQ=255) aGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTTCATAACCATATGCTTCACCATTATcc > 2:177156/1‑148 (MQ=255) aGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATcc < 2:1191451/148‑1 (MQ=255) aGGTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATcc < 1:796484/148‑1 (MQ=255) aGGTCCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATcc < 1:165179/148‑1 (MQ=255) ggTGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGGGTCAGGCCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCa < 2:568841/148‑1 (MQ=255) tGCAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATa > 1:1403729/1‑148 (MQ=255) cAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTCTCAGTTTCATAGCCCTATCCTTTCCCTTTATCCATTAt > 1:129049/1‑148 (MQ=255) cAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAAt < 1:1224496/148‑1 (MQ=255) cAAAGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAAt < 1:1234889/148‑1 (MQ=255) cAAAGCCAATCCCAATTGAATAAG‑TTACAGGACAGCCAAAGAGAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAAt > 2:126423/1‑148 (MQ=255) aaGCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTAAAATTTAATCTTTTGCATAGCCATATGCTTCACCATTATCCCTAATTg > 2:292002/1‑148 (MQ=255) cgccccccccgATGGAATAAG‑TTACAGGACTGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTgt < 1:1016884/141‑1 (MQ=255) aGCCAATCCCCATAGAAAAAG‑TGACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTTTTGCATAGCCATATGCTTCACCATTATCCATAATTgt < 1:823000/148‑1 (MQ=255) gCCAATCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTgta < 2:840433/148‑1 (MQ=255) ccAATCCCCAGTGAATAAG‑TTACATGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTTCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTgtag < 2:9566/148‑1 (MQ=255) ccAACCCCCATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTgtag < 1:571565/148‑1 (MQ=255) cATTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATcc < 1:489165/148‑1 (MQ=255) aTTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCt < 1:236077/148‑1 (MQ=255) aTTGAATAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCCTTTAACTCGTTTTTATATTTTTCATAACCATATGCTTCACCATTATCCATAATTGTAGTAATATCCt < 1:676160/148‑1 (MQ=255) aaTAAG‑TTCCAGGACATCCCATGATAAATCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATTCATAATTGTAGTAATATCCTTGaa < 1:701709/148‑1 (MQ=255) aaTAAG‑TTACAGGACAGCCAATGATAAAGCCATGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCTTGaa < 2:745346/148‑1 (MQ=255) aaTAAG‑TTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGTGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCTTGaa < 1:1079916/148‑1 (MQ=255) tAAG‑TTACATGACGGTCAATGAAAACGCCACGCGCTTCAGGTCCTACAACGATAGCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCTTGAAAc < 2:386623/148‑1 (MQ=255) | AACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAG‑CTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCTTGAAAC > USA300TCH1516_ALE/1744328‑1744616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |