Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC USA300TCH1516_ALE 1,747,374 Δ3 bp 100% coding (2073‑2075/2280 nt) USA300HOU_RS08710 ← Heme uptake protein MmpL11

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1747374 1747376 3 30 [0] [0] 30 USA300HOU_RS08710 Heme uptake protein MmpL11

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1747377 =0 (0.000)25 (0.460) 21/244 NT 100% coding (2072/2280 nt) USA300HOU_RS08710 Heme uptake protein MmpL11
?USA300TCH1516_ALE = 1747373 0 (0.000)coding (2076/2280 nt) USA300HOU_RS08710 Heme uptake protein MmpL11

CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAAC  >  USA300TCH1516_ALE/1747241‑1747514
                                                                                                                                        |                                                                                                                                         
tttcaactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaactac                                                                                                                                       <  1:446500‑M1/5‑1 (MQ=255)
 ttcaactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaactact                                                                                                                                      >  1:285524‑M1/136‑141 (MQ=255)
      tttatgtttttttattattccacatagcggaacggcaatgaagattgaagagaatacatcagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAAt                                                                                                                                 >  1:201329‑M1/131‑141 (MQ=255)
               tttcatttttccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTaa                                                                                                                        >  1:113176‑M1/122‑141 (MQ=255)
                        tccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTAtt                                                                                                               <  2:172928‑M1/29‑1 (MQ=255)
                            ctatgcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAAtt                                                                                                           >  1:596813‑M1/109‑141 (MQ=255)
                             atagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgcatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTg                                                                                                          <  2:516587‑M1/34‑1 (MQ=255)
                              tagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGa                                                                                                         >  2:200453‑M1/107‑141 (MQ=255)
                                gaggaacggaaatgaagattgaagagaatacaccagaaatcaatccgataaataatgacacagtaaagttgaatatcgtaggagcaccgaagaatcgtatagcaACTACTACAATAAACGTAGATACTGTTATAATtgacc                                                                                                       <  2:182829‑M1/37‑3 (MQ=255)
                                 cggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACg                                                                                                      >  2:3912‑M1/104‑141 (MQ=255)
                                              aagattgaagagaatccaccagaactcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATtgtctgt                                                                                         >  1:279569‑M1/91‑141 (MQ=255)
                                              aagattgaagagaatacaccagaaatctatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATtgtctgt                                                                                         >  1:670412‑M1/91‑141 (MQ=255)
                                                 attgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTa                                                                                      <  1:111405‑M1/54‑1 (MQ=255)
                                                      agagattacaccagacatctatccgataaatggtgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGa                                                                                 >  1:94517‑M1/83‑141 (MQ=255)
                                                       gagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTATTTGAt                                                                                <  2:334448‑M1/60‑1 (MQ=255)
                                                       gagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGAt                                                                                >  2:551712‑M1/82‑141 (MQ=255)
                                                                     tatcaattcgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATatc                                                                  >  1:148472‑M1/68‑141 (MQ=255)
                                                                         aacccgataaatgatgctaaggtaaagtggaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATAtcatca                                                              >  2:612823‑M1/64‑141 (MQ=255)
                                                                            ccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAAtt                                                           <  2:205768‑M1/81‑1 (MQ=255)
                                                                                          taaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGt                                             >  1:36264‑M1/47‑141 (MQ=255)
                                                                                          caaagtaaagttgaatatagtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGt                                             >  2:243787‑M1/47‑141 (MQ=255)
                                                                                                       aatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAGTTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCACTTTGTTCTGTTGTCGTAATCACTTTAAcc                                <  2:74348‑M1/108‑1 (MQ=255)
                                                                                                            cgtaggagcaccgaacaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTg                           >  1:183161‑M1/29‑141 (MQ=255)
                                                                                                             gtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGt                          >  2:81061‑M1/28‑141 (MQ=255)
                                                                                                                     accgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTTGTAATCACTTTAAACTTTTGTTAGTTTTc                  <  2:279092‑M1/122‑1 (MQ=255)
                                                                                                                     accgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTc                  <  2:690046‑M1/122‑1 (MQ=255)
                                                                                                                       cgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCAc                >  2:521739‑M1/18‑141 (MQ=255)
                                                                                                                       cgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCAc                <  1:485656‑M1/124‑1 (MQ=255)
                                                                                                                                   tagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCaa    <  1:626020‑M1/136‑1 (MQ=255)
                                                                                                                                     gcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACTTACACGGTCAAAc  <  1:600114‑M1/138‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                         
CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAAC  >  USA300TCH1516_ALE/1747241‑1747514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑