BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	94 (0.750)	58 (0.650) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	15/194	7.2	43.2%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
*	?	USA300TCH1516_ALE	2478252 =	118 (0.940)	58 (0.650) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	15/194	7.2	43.2%	intergenic (+139/‑436)	USA300HOU_RS12760/USA300HOU_RS12765	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 118 total aligned reads displayed.

AATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGG  >  USA300TCH1516_ALE/2478112‑2478389

aaTCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAACCTAAAGAGTCTGGGACATTAATCCCT‑aaaaaaa                                                                                                                                            >  2:968578/1‑141 (MQ=255)

aaTCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑aaaaaaa                                                                                                                                            >  1:844862/1‑141 (MQ=255)

  tCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAc                                                                                                                                          <  2:542087/141‑1 (MQ=255)

      caaacaaaCTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAcagca                                                                                                                                      >  1:771266/1‑141 (MQ=255)

         acaaacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTa                                                                                                                                   >  3:279268/1‑141 (MQ=255)

          caaacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTaa                                                                                                                                  <  4:204192/141‑1 (MQ=255)

            aacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATGGAAAATAAATAAACTAAAGAGTCTGGGACATTAAAAAAA‑AAAAAAAACAGCAGTAAGa                                                                                                                                <  2:509890/141‑1 (MQ=255)

             acTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAt                                                                                                                               >  2:225584/1‑141 (MQ=255)

             acTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAt                                                                                                                               >  2:391839/1‑141 (MQ=255)

                 ttattatAGGTTGTTTCTAATATTGGGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAtt                                                                                                                           <  4:327456/141‑1 (MQ=255)

                 ttattatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAtt                                                                                                                           <  3:133843/141‑1 (MQ=255)

                 ttattatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAtt                                                                                                                           >  2:1015142/1‑141 (MQ=255)

                   attatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAtttt                                                                                                                         >  2:844082/1‑141 (MQ=255)

                     tataGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑a                                                                                                                      >  3:345110/1‑141 (MQ=255)

                     tataGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑a                                                                                                                      >  3:56513/1‑141 (MQ=255)

                        aGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AAtt                                                                                                                   >  3:375161/1‑141 (MQ=255)

                          gttgttTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAg                                                                                                                 <  1:994394/141‑1 (MQ=255)

                           ttgttTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGa                                                                                                                <  1:645441/141‑1 (MQ=255)

                             gttTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGaaa                                                                                                              >  4:297277/1‑141 (MQ=255)

                              tttCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGaaaa                                                                                                             <  1:392832/141‑1 (MQ=255)

                               ttCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAat                                                                                                            <  2:771266/141‑1 (MQ=255)

                               ttCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAat                                                                                                            >  4:222174/1‑141 (MQ=255)

                                 cTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAatat                                                                                                          <  1:87378/141‑1 (MQ=255)

                                   aaTATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGt                                                                                                                                    <  3:295380/114‑1 (MQ=255)

                                   aaTATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGt                                                                                                                                    >  4:295380/1‑114 (MQ=255)

                                    atatTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCtt                                                                                                       >  1:791725/1‑141 (MQ=255)

                                            tCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGt                                                                                               <  2:933499/141‑1 (MQ=255)

                                             cAAACTATCTTTAAATATTCGTTAATCCTTTATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGTATATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTATTGGTGtt                                                                                              >  4:363948/1‑141 (MQ=38)

                                             cAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGtt                                                                                              <  1:155725/141‑1 (MQ=255)

                                             aaaaCTAGCTTTGAATATTCGTGAATCATTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGtt                                                                                              <  4:331990/140‑1 (MQ=255)

                                              aaaCTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtc                                                                                             <  1:479338/141‑1 (MQ=255)

                                              aaaCTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtc                                                                                             <  1:479012/141‑1 (MQ=255)

                                               aaCTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtct                                                                                            <  1:371330/141‑1 (MQ=255)

                                                aCTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtctc                                                                                           >  1:527639/1‑141 (MQ=255)

                                                  tATTTTTCAATCTTCGTTAACCCTTGCTTCGACACTAGTTCTATTGAAAATAAATAAACTCAAGCGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATCTCTTACTGCTGTTCTCTa                                                                                         >  2:612589/1‑141 (MQ=21)

                                                       ttAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                                                                    >  1:855789/1‑141 (MQ=255)

                                                        tAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATATTTTCT‑AATT‑GAAAat                                                                                                            >  4:173188/1‑115 (MQ=38)

                                                        tAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAat                                                                                                            <  3:173188/115‑1 (MQ=38)

                                                         aaaTATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATAc                                                                                  <  1:169391/141‑1 (MQ=255)

                                                              ttCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAc                                                                             >  2:26277/1‑141 (MQ=255)

                                                               tCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTCTTTATACAATACt                                                                            >  1:370438/1‑141 (MQ=255)

                                                               tCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTta                                                                                     >  2:192349/1‑132 (MQ=255)

                                                               tCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTta                                                                                     <  1:192349/132‑1 (MQ=255)

                                                                cGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                                                                           >  2:351388/1‑141 (MQ=255)

                                                                cGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                                                                           <  1:637873/141‑1 (MQ=255)

                                                                  ttAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCg                                                                         >  3:412930/1‑141 (MQ=255)

                                                                       ccTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                                                                    <  2:703676/141‑1 (MQ=255)

                                                                          tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                 >  1:146646/1‑141 (MQ=255)

                                                                          tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                 >  1:808643/1‑141 (MQ=255)

                                                                               aGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                                                             <  2:73454/141‑1 (MQ=255)

                                                                               aGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt                                                            >  2:425959/1‑141 (MQ=255)

                                                                                gACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTc                                                           >  4:170817/1‑141 (MQ=255)

                                                                                gACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTc                                                           <  2:532417/141‑1 (MQ=255)

                                                                                  cAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc                                                         >  1:659067/1‑141 (MQ=255)

                                                                                   aaTTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt                                                        <  1:586189/141‑1 (MQ=255)

                                                                                   aaTTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt                                                        <  1:586253/141‑1 (MQ=255)

                                                                                    aTTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAatat                                                                                                          <  1:304827/90‑1 (MQ=255)

                                                                                    aTTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAatat                                                                                                          >  2:304827/1‑90 (MQ=255)

                                                                                    aTTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTa                                                       >  2:622793/1‑141 (MQ=255)

                                                                                      tattATATGAAAAATAAATAAACTAAAGAGTCTGGGACATAAAAAAAA‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATg                                                     <  4:290108/139‑1 (MQ=17)

                                                                                         tataTTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGATCTCTATTTATACAATACTTCGTATTGAATGGCTTAGCTATGccc                                                  >  1:357423/1‑141 (MQ=255)

                                                                                            atTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATc                                               >  2:699571/1‑141 (MQ=255)

                                                                                             ttGAAAATAAATAAACTAAAGAGTCTGGTACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCt                                              <  1:210403/141‑1 (MQ=255)

                                                                                             ttGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCt                                              <  1:847366/141‑1 (MQ=255)

                                                                                               gAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTgg                                            <  3:261473/141‑1 (MQ=255)

                                                                                               gAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTgg                                            <  4:143583/141‑1 (MQ=255)

                                                                                               gAAAATAAATAAACTAAAGAGTCTGGAACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTgg                                            <  2:706399/141‑1 (MQ=255)

                                                                                                    taaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAt                                       >  1:639572/1‑141 (MQ=255)

                                                                                                    taaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAt                                       >  3:131705/1‑141 (MQ=255)

                                                                                                     aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtct                                                                                            <  1:977951/87‑1 (MQ=255)

                                                                                                     aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTtct                                                                                            >  2:977951/1‑87 (MQ=255)

                                                                                                     aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                      >  3:330209/1‑141 (MQ=255)

                                                                                                      aataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTa                                     >  4:268193/1‑141 (MQ=255)

                                                                                                      aataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTa                                     >  2:351068/1‑141 (MQ=255)

                                                                                                       ataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCCCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTAc                                    >  2:437967/1‑141 (MQ=255)

                                                                                                        taaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTATAGAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACt                                   <  2:547392/141‑1 (MQ=255)

                                                                                                         aaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTg                                  >  2:764180/1‑141 (MQ=255)

                                                                                                         aaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTg                                  <  1:351068/141‑1 (MQ=255)

                                                                                                         aaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTg                                  <  1:948805/141‑1 (MQ=255)

                                                                                                         aaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTg                                  >  2:764168/1‑141 (MQ=255)

                                                                                                         aaaCTAAAGAGTCTGGGACATTAATCACT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTg                                  <  4:159617/141‑1 (MQ=255)

                                                                                                             tAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaa                              <  1:641990/141‑1 (MQ=255)

                                                                                                               aaGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAt                            >  3:418621/1‑141 (MQ=255)

                                                                                                                agagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAtt                           >  3:35773/1‑141 (MQ=255)

                                                                                                                 gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTc                          >  1:634441/1‑141 (MQ=255)

                                                                                                                  agTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCt                         <  2:728410/141‑1 (MQ=255)

                                                                                                                   gTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaataaagtt                        >  1:792398/1‑134 (MQ=255)

                                                                                                                     cTGGGACATTAAGCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtata                      <  2:390020/141‑1 (MQ=255)

                                                                                                                      tGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaa                     >  2:351728/1‑141 (MQ=255)

                                                                                                                      tGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaa                     >  1:411982/1‑141 (MQ=255)

                                                                                                                       gggACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaaa                    >  1:916954/1‑141 (MQ=255)

                                                                                                                        ggACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAAt                   <  4:131705/141‑1 (MQ=255)

                                                                                                                        ggACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAAt                   <  3:325047/141‑1 (MQ=255)

                                                                                                                          aCATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAg                 <  2:707432/141‑1 (MQ=255)

                                                                                                                             ttAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAt              >  2:711432/1‑141 (MQ=255)

                                                                                                                             ttAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAt              >  2:1018491/1‑141 (MQ=255)

                                                                                                                               aaTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTATTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAttt            >  4:337195/1‑141 (MQ=255)

                                                                                                                                aTCCCTAAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAttt            <  2:42470/141‑1 (MQ=255)

                                                                                                                                    cT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtgat       <  4:334975/141‑1 (MQ=255)

                                                                                                                                    cT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtgat       <  1:809099/141‑1 (MQ=40)

AATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGG  >  USA300TCH1516_ALE/2478112‑2478389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.