Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP000731 1613 1830 218 2 [1] [1] 2 repA/USA300HOU_pUSA300HOUMR0003 replication protein A/hypothetical protein

AGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAGTATCTAAAAAATTAGTCACTGATTTTGCTGAAATTTTTGTTTGTGAAATTAGCATATATTTATTTGGCTCATATTTGCGTTTTAAGAGACTGTATAGATTTTTAAGTACAAAACCTAT  >  CP000731/1703‑1971
                                                                                                                                |                                                                                                                                            
aGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCATGAAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGt                                                                                                                                  <  2:341796/141‑1 (MQ=255)
                                                                                                                                tAAATTTGCATGTAAATGGGCAGTATCTAAAAAATTAGTCACTGATTTTGCTGAAATTTTTGTTTGTGAAATTAGCATATATTTATTTGGCTCATATTTGCGTTTTAAGAGACTGTATAGATTTTTAAGTACAAAACCtat  >  1:356244/1‑141 (MQ=255)
                                                                                                                                |                                                                                                                                            
AGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAGTATCTAAAAAATTAGTCACTGATTTTGCTGAAATTTTTGTTTGTGAAATTAGCATATATTTATTTGGCTCATATTTGCGTTTTAAGAGACTGTATAGATTTTTAAGTACAAAACCTAT  >  CP000731/1703‑1971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: