Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	USA300TCH1516_ALE	68,656	Δ3 bp	5.4%	coding (772‑774/852 nt)	USA300TCH1516_00061 →	hypothetical protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	68659 =	57 (0.750)	3 (0.050)	3/224	NT	5.4%	coding (775/852 nt)	USA300TCH1516_00061	hypothetical protein
	?	USA300TCH1516_ALE	= 68655	57 (0.880)					coding (771/852 nt)	USA300TCH1516_00061	hypothetical protein

AACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCT  >  USA300TCH1516_ALE/68526‑68797                                                                                                                                      |                                                                                                                                           gggaacacctgccgataacgccccgatagaaagtttccattcctcgctaaagtctgaaactttttacatcaataatgagcttaatcactctaatcacattgtaatagatattgtcgaaaagtacattaaaaacaataataa                                                                                                                                     <  2:452619‑M1/8‑1 (MQ=255)      cacctgccgataacgccccgatagaaagtttccattcctcgctaaagtctgaaactttttacatcaataatgagcttaatcactctaatcacattgtaatagatattgtcgaaaagtacattaaaaacaataataataata                                                                                                                                >  1:158120‑M1/129‑141 (MQ=255)           gccgataacgccccgatagaaagtttccattcctcgctaaagtctgaaactttttacatcaataatgagcttaatcactctaatcacattgtaatagatattgtcgaaaagtacattaaaaacaataataataataataat                                                                                                                           >  2:375269‑M1/124‑141 (MQ=255)                 gCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAAtt                                                                                                                     >  1:600958/1‑141 (MQ=255)                 gCCCCGATAGAAAGTTTCCATGCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAAtt                                                                                                                     <  2:122600/141‑1 (MQ=255)                     cGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTcaac                                                                                                                 <  1:392529/141‑1 (MQ=255)                          gAAAGTTTCCATTCCTCGCTAAGCCCGGAAACTGTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACaaaaa                                                                                                            >  1:440490/1‑141 (MQ=21)                          gAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACaaaaa                                                                                                            >  2:846538/1‑141 (MQ=255)                            aaGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACt                                                                                                          <  1:503107/141‑1 (MQ=255)                                ttCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGc                                                                                                      <  1:708434/141‑1 (MQ=255)                                  ccATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTa                                                                                                    <  1:537009/141‑1 (MQ=255)                                  ccATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAACAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTa                                                                                                    <  1:716713/141‑1 (MQ=255)                                    aTTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACt                                                                                                  <  2:327233/141‑1 (MQ=255)                                         tCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTACTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCAACTTCAACAAAAAATAGACTACTTATcc                                                                                             >  1:99357/1‑141 (MQ=21)                                           ccTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATcccc                                                                                           <  1:759312/140‑1 (MQ=255)                                             tAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTg                                                                                         <  2:841250/141‑1 (MQ=255)                                              aaaGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAACAATAATAATCGAATTCAATAAAAATTAGGCTACTTATCCCCTGt                                                                                        <  1:499628/141‑1 (MQ=255)                                                aGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTATAAGGACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTaa                                                                                      >  1:711801/1‑141 (MQ=255)                                                    tGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATa                                                                                  <  1:910486/141‑1 (MQ=255)                                                    gtctgaaactttttacatcaataatgagcttaatcactctaatcacattgtaatagatattgtcgaaaagtacattaaaaacAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATa                                                                                  >  2:896026‑M1/83‑141 (MQ=255)                                                        aCTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACaga                                                                              <  1:41936/141‑1 (MQ=255)                                                        aCTTATTACATCAATAGTTATCTGAACCACTCTAAACACATTGTAATAGATAATGACGAAAAGTAAATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAATCTAGGCTACTCATCCCCTCTAAATTACaga                                                                              <  2:340557/141‑1 (MQ=21)                                                           ttttACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGCAATTGTCGAAAAGTACATTACAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACagagca                                                                           >  1:558145/1‑139 (MQ=255)                                                                  tCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAg                                                                    >  2:98304/1‑141 (MQ=255)                                                                  tCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATACCCTGTAAAATACAGAGAATTAATAg                                                                    >  1:143491/1‑141 (MQ=255)                                                                    aatagtGAGCTTAATCACTATAAGCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGcc                                                                  <  1:656810/141‑1 (MQ=255)                                                                      taatGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTa                                                                >  2:865647/1‑141 (MQ=255)                                                                       aatGAGCTTAATCAGTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAg                                                               <  2:343893/141‑1 (MQ=255)                                                                        atGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGa                                                              <  1:110353/141‑1 (MQ=255)                                                                        atGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGa                                                              <  1:33232/141‑1 (MQ=255)                                                                        atGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGa                                                              >  2:15232/1‑141 (MQ=255)                                                                            gCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACAt                                                          >  1:731917/1‑141 (MQ=255)                                                                            gCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAGTAATAGCCTAGAACAt                                                          <  1:452619/141‑1 (MQ=255)                                                                             gagcttaatcactctaatcacattgtaatagatattgtcgaaaagtacattaaaaacAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATg                                                         <  1:238835‑M1/84‑1 (MQ=255)                                                                               tAATCACTCTAATCACATTTTAATAGATATTGTCGAAAACTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgt                                                       <  2:398052/141‑1 (MQ=255)                                                                               tAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgt                                                       <  2:879421/141‑1 (MQ=255)                                                                                  caccgctAATCACATTGTAAAAGATAATGTCGAAGAGTACATTAAAAACAATAATAATGATAATAATAATCGAATTCAACAAAAACTAGGCTACCTCTCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtt                                                    <  2:484334/136‑1 (MQ=21)                                                                                       ctAATCACATTGTAATAGATATTGTCGAAAATTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttat                                               >  1:39088/1‑141 (MQ=255)                                                                                          aTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATACTAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTaa                                            <  2:890018/141‑1 (MQ=255)                                                                                          aTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTaa                                            <  1:724993/141‑1 (MQ=255)                                                                                          aTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTaa                                            <  2:293081/141‑1 (MQ=255)                                                                                          aTCACACTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAACAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTaa                                            <  2:499574/141‑1 (MQ=255)                                                                                              caTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  2:768567/141‑1 (MQ=255)                                                                                              caTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  2:892788/141‑1 (MQ=255)                                                                                              caTCGTAAAAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  2:86573/141‑1 (MQ=255)                                                                                                   tAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGtt                                   <  1:513177/141‑1 (MQ=255)                                                                                                     agagagATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGtttt                                 <  2:254580/139‑1 (MQ=255)                                                                                                     aTAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGtttt                                 <  1:258489/141‑1 (MQ=255)                                                                                                            ttGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGtt                          >  1:270477/1‑141 (MQ=255)                                                                                                            ttGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGtt                          <  2:453883/141‑1 (MQ=255)                                                                                                             tGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                         <  1:528787/141‑1 (MQ=255)                                                                                                              gTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa                        >  1:460384/1‑141 (MQ=255)                                                                                                              gTCGAAAAGTACATCAAAACCAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTCTTTACTAAGTTCCCTTTTTAAGGGTTCa                        >  2:218819/1‑141 (MQ=18)                                                                                                               tCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAg                       <  2:147311/141‑1 (MQ=255)                                                                                                               gcGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAg                       <  1:540152/140‑1 (MQ=255)                                                                                                               acGAAAAGTACATTAAAAACAATAATAATACTAATAATCATCGAATTCACCAAAAACTAGGCTCCTTATCCCCTGTAAACTACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAg                       <  2:39319/140‑1 (MQ=18)                                                                                                                cGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt                      >  1:502679/1‑141 (MQ=255)                                                                                                                  aaaaGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGc                    <  1:740682/141‑1 (MQ=255)                                                                                                                  aaaaGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGATTCAGTGc                    >  1:714654/1‑141 (MQ=255)                                                                                                                   aaaGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAAAACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGcc                   >  2:897088/1‑141 (MQ=255)                                                                                                                       aagtacattagaaaaAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTAAGTGCCCTAg               <  2:618117‑M1/126‑1 (MQ=255)                                                                                                                          aTTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGAt            >  1:49719/1‑141 (MQ=255)                                                                                                                           ttAACAAAAATAATAAAAATAATAAGATTCGACATCAACAAACACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGAtt           <  1:317403/141‑1 (MQ=17)                                                                                                                                    ataataataataataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTCTTGGctct  >  2:256570/1‑141 (MQ=255)                                                                                                                                    ataataataataataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGctct  <  1:15232/141‑1 (MQ=255)                                                                                                                                    ataataataataataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGctct  >  2:256465/1‑141 (MQ=255)                                                                                                                                      |                                                                                                                                           AACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCT  >  USA300TCH1516_ALE/68526‑68797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.