| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1380507 = | 58 (0.670) | 4 (0.050) | 3/286 | 7.7 | 5.1% | intergenic (+321/‑571) | opuD_1/acnA | Glycine betaine transporter OpuD/Aconitate hydratase A |
| ? | USA300TCH1516_ALE | = 2031786 | 93 (1.110) | intergenic (+252/+238) | USA300HOU_RS10250/USA300HOU_RS10255 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTA > USA300TCH1516_ALE/1380359‑1380649 | ttCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGAGATAAATCAATATTCTATGCTTTACGAAGTTATATTGGGAGTAGtt > 2:606346/1‑149 (MQ=255)ttCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGtt > 2:190883/1‑149 (MQ=255)ttCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGtt > 2:539949/1‑149 (MQ=255) tCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTg < 2:60951/149‑1 (MQ=255) gAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACt > 1:110201/1‑149 (MQ=255) aaaCTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGa < 2:649304/149‑1 (MQ=255) aaaCTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGa < 1:778551/149‑1 (MQ=255) ggggTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCtt < 2:715124/149‑1 (MQ=255) ggggTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCtt < 1:16633/149‑1 (MQ=255) ggggTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCtt > 1:799710/1‑149 (MQ=255) tttGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTaa > 2:676981/1‑149 (MQ=255) gACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACaa > 1:852313/1‑149 (MQ=255) aacTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCttt < 2:923578/147‑1 (MQ=255) aGCAAAAGGGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCttt < 2:898831/149‑1 (MQ=255) gACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAg < 1:192038/149‑1 (MQ=255) ggTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAgggg > 1:56975/1‑149 (MQ=255) ggTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAgggg > 1:892857/1‑149 (MQ=255) tataAACGAAAATCAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGcc < 2:547099/149‑1 (MQ=255) ataAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGccc < 1:196833/149‑1 (MQ=255) aaCGCAAATTAAATATACTGTTATAGAAAAGTAACGCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCaa > 2:926392/1‑149 (MQ=255) aCTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCATTTCTAGTCAGGGGCCCCAACACAGGGCATTTCgca > 1:742944/1‑147 (MQ=255) aCTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaa > 1:14112/1‑149 (MQ=255) aCTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaa > 1:364438/1‑149 (MQ=255) aCTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaa < 1:484437/149‑1 (MQ=255) cTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaa < 1:346882/149‑1 (MQ=255) cTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaa < 1:544034/149‑1 (MQ=255) ttttATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCATGGGCCCCAACACAGAGAATTTCGaaaa < 1:606346/149‑1 (MQ=255) ttttATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaaa < 1:539949/149‑1 (MQ=255) ttttATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaaa < 1:190883/149‑1 (MQ=255) gAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTc > 1:273830/1‑149 (MQ=255) gAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTc > 1:484595/1‑149 (MQ=255) gAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCATGTAACAAGCTTTTTTTTTTTTTTTTCAGGGGGCACAACACCAAGAATTTCGCAAAGGAATTc > 2:639682/1‑149 (MQ=14) gAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTAAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTc > 2:495573/1‑149 (MQ=255) aCTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCa > 2:846627/1‑149 (MQ=35) aaaTCAATCTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGa < 1:926392/149‑1 (MQ=17) aaTATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGcc > 1:899778/1‑149 (MQ=38) tCTATGCTCGACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAGGAAATTCTACAGGCAATGCGAGTTTGGGTGAGGGCCCCAac < 2:590811/149‑1 (MQ=255) tATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAacac > 2:659972/1‑149 (MQ=39) tATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGCTGGGGGGAGGGCCCCCacac > 2:573700/1‑149 (MQ=255) gCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGa > 1:801886/1‑149 (MQ=38) ctctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTTATTTTAGTCAGGGGCCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGGCAATGCGAGTTGGCGTGAGGCCCCCAACACCGaa > 2:755319/1‑149 (MQ=11) ctctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGaa > 1:438769/1‑149 (MQ=38) ctctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTAAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAAGGCTCCAACCCAGaa > 1:711799/1‑149 (MQ=255) tctACGAAGTTATATTGGTAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACCCAGAGGATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGCGTGAGGGCCCCAACACAGAAg > 2:53816/1‑149 (MQ=255) tctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGAGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAAACCAGAGAATTTCGAAAAGAAATTCTAAAGGCAATGCGCGTTGGGGTGGGGGCCCCAACACGGAAg > 1:165894/1‑149 (MQ=11) tctACCAAGTTATATTTGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAg < 1:625187/149‑1 (MQ=255) actccGAAGTTATAGTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAg < 1:625194/145‑1 (MQ=255) cGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCtta > 1:344875/1‑147 (MQ=255) gAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGAc > 2:705000/1‑149 (MQ=39) aaGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACg > 1:509887/1‑149 (MQ=38) tatTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGAAAAGt > 1:664188/1‑149 (MQ=37) tGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGAAAAGTCAg > 1:44932/1‑149 (MQ=38) ggCAGCAGTTGACTGAACGCAAATGCGCGTGTAACAAGCTTGTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGACAAGTCAGc > 2:315397/1‑149 (MQ=11) gCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTTTTTAGGGGCCCCAACGCAGAGAATTTAAAAAAGAGATTCTAGAGGCAATGCGAGTGGGGGTGCGGCCCCCAACACAGAAGCTGACGAAAAGTCAGCt > 2:242428/1‑149 (MQ=11) gCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGGAAAGTCAGCt > 1:170656/1‑149 (MQ=37) cAGTAGTTGGCTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTATTCAGGGCCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTCGGGTGAGCGCCCCAACACAGAAGCTGACGAAAAGTCAGCtt < 2:615812/149‑1 (MQ=11) cAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTCGGGGTGAGGGCCCCAACACAGAAGTTGACGAAAAGTCAGCtt < 2:315253/149‑1 (MQ=21) agtagtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCACCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTa < 1:355883/149‑1 (MQ=38) | TTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGTATAAACGCAAATTAAATATACTTTTATAGAAAATTAACTCAGGCTGGGACATAAATCAATATTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGAGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTA > USA300TCH1516_ALE/1380359‑1380649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |