BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 848580	114 (0.940)	6 (0.050) +CTGAAAAAAAAAA	5/254	7.8	5.2%	intergenic (+585/‑295)	trxB/USA300HOU_RS04145	Thioredoxin reductase/Nucleotide‑binding protein
*	?	USA300TCH1516_ALE	2866847 =	127 (1.050)	6 (0.050) +CTGAAAAAAAAAA	5/254	7.8	5.2%	intergenic (‑246/+207)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 128 total aligned reads displayed.

GCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAG  >  USA300TCH1516_ALE/2866708‑2866987

gCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAACTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaa                                                                                                                                             >  2:446940/1‑141 (MQ=255)

  cttCAGGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaa                                                                                                                                           <  1:355600/140‑1 (MQ=255)

      aTGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                                                                       >  1:153014/1‑141 (MQ=255)

      aTGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                                                                       >  2:576747/1‑141 (MQ=255)

      aTGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                                                                       >  1:1106580/1‑141 (MQ=255)

       tGATACTTTCATAATCTAGGAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCt                                                                                                                                      >  1:746175/1‑141 (MQ=255)

       tGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATAATTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCt                                                                                                                                      >  2:982552/1‑141 (MQ=255)

       tGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAACTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATGCATTTCGTCGTCCCGCCCCACCGAGGGTGACTAGAATTGAAAAAAGCt                                                                                                                                      >  2:1295819/1‑141 (MQ=25)

             tttCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAGAAGCTTGTTAc                                                                                                                                >  2:302080/1‑141 (MQ=255)

              ttCATAAACTAGCAATAAAGGGTTCACATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAACATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACa                                                                                                                               <  1:824630/141‑1 (MQ=255)

              ttCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACa                                                                                                                               >  2:336617/1‑141 (MQ=255)

              ttCATAAACTAGCAACACCGGGTTCACATGAAAGTATCTCCAGCTCAACTTAGGGAGCGGCAAAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACa                                                                                                                               <  1:960566/141‑1 (MQ=18)

                   aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgctc                                                                                                                          <  2:362285/141‑3 (MQ=255)

                   aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                                                                          <  1:1311597/141‑1 (MQ=255)

                   aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                                                                          <  1:1311839/141‑1 (MQ=255)

                   aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                                                                          <  2:1274432/141‑1 (MQ=255)

                    aaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAGCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCa                                                                                                                         >  1:135999/1‑141 (MQ=255)

                    aaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCa                                                                                                                         >  2:222555/1‑141 (MQ=255)

                      cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                                                                                                       >  2:463685/1‑141 (MQ=255)

                       tAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt                                                                                                                      <  1:1072309/141‑1 (MQ=255)

                       tAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt                                                                                                                      <  1:836892/141‑1 (MQ=255)

                        tgCAATAAAGGGGTCAAATGAAAGTATATCCCGCTCCAATTAGGGAGGGGGACAGGAATGGTATTTTCGCAAAATTTATTTTCGCGTTCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                                                                                                                     <  1:155196/140‑1 (MQ=18)

                        aGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                                                                                                                     <  1:794382/141‑1 (MQ=255)

                         gCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCTTTTTc                                                                                                                    >  1:382168/1‑141 (MQ=255)

                           aaTAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                  <  2:1060466/141‑1 (MQ=255)

                             tAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGGTCTTTTAGCAAAATTTATTTCGTCGGCCCACCCCAGCAAGGGTGACTAGAATTGAAAAAGGTATGTTACAAGCGGATTTTCGttg                                                                                                                >  2:1265/1‑140 (MQ=18)

                               aaGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                              <  1:1157161/141‑1 (MQ=255)

                               aaGGGTTCAAATGAAAGTATACCCAACGCAAATTAGGGAGTGGGACAGAAATGAAATCTTCGCAAAATTTATTTCTTCGTCCCACCCCAGCAAGTTTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                              <  2:1108061/141‑1 (MQ=18)

                                  ggTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                           <  2:227659/141‑1 (MQ=255)

                                    ttCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac                                                                                                         >  2:95764/1‑141 (MQ=255)

                                        aaTGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                                                                                                     >  1:899952/1‑141 (MQ=255)

                                         aagAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                                    <  1:461579/139‑1 (MQ=255)

                                             aaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                                                                                                >  2:565118/1‑141 (MQ=255)

                                             aaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                                                                                                >  1:1070512/1‑141 (MQ=255)

                                             aaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATCTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTCCTGCCaa                                                                                                >  1:1373393/1‑141 (MQ=255)

                                              aGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAACAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                               <  1:1069135/141‑1 (MQ=255)

                                                tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                                                                                             <  1:96792/141‑1 (MQ=255)

                                                tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                                                                                             <  1:336617/141‑1 (MQ=255)

                                                    tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt                                                                                         <  1:1184587/141‑1 (MQ=255)

                                                      cAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGGAAAAAGCTTGTTACAAGCGCATTTTCGTTCATTCAACTACTGTCAATCTAACttt                                                                                       >  1:1025571/1‑140 (MQ=255)

                                                      cAGCTCAAATTAGGGAGAGGGACAGAAACGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATAGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc                                                                                       <  2:496855/141‑1 (MQ=255)

                                                      cAGCGCAAATCAGGTAGAGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc                                                                                       <  2:665635/141‑1 (MQ=255)

                                                      cAGATCAAAGTACGGAGAGGGACAACAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACACCAGCAAGGTTGACTAGAATGTAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc                                                                                       <  2:1256583/141‑1 (MQ=14)

                                                        gCTCGAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTTCTGCCAATATAACTTCGt                                                                                     >  1:935366/1‑141 (MQ=255)

                                                        gCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGt                                                                                     >  1:1130634/1‑141 (MQ=255)

                                                         cttaaaTTAGGGAGTGGGACAGAAATGCTTTTTTCGCAATATGTATTTCGTCGTCCCCCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTa                                                                                    <  1:584051/138‑1 (MQ=14)

                                                         cTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTa                                                                                    <  2:974931/141‑1 (MQ=255)

                                                           cAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCTATATAACTTCGTaga                                                                                  <  1:1014181/141‑1 (MQ=255)

                                                           cAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTaga                                                                                  <  1:575899/141‑1 (MQ=255)

                                                            aaaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCACGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCATTCAACTACTGCAAATATTACTTCGTcgag                                                                                 >  1:924170/1‑141 (MQ=14)

                                                             aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGc                                                                                >  1:1364236/1‑141 (MQ=255)

                                                              aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGATGACTAGAATTGAAAAAAGCTTGTTACAAACGCATTTTCGTTCAGTCAACTACTCCCAATATTACTTCGTacacac                                                                               >  2:538170/1‑136 (MQ=14)

                                                               ttAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGcgt                                                                              >  1:1336602/1‑139 (MQ=255)

                                                                   ggAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGaa                                                                          <  2:977065/141‑1 (MQ=255)

                                                                      gTGGGACAGAAATGATATTTCCGCAAAATTTATTTCGTCGTCCCACCCCATCAAGGTTGAATAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt                                                                       <  2:932803/141‑1 (MQ=14)

                                                                      gTGGGACAGAAAGGATGTTTTCGCAAAATTTATTTCGTCGTCCCAGCCCAGCAAGGTTGACTAGAATTGAAAAAAGCGTGTGACAAGCGCATGTTCCTTCAGCCAACTACTGCCAATATAACTTAGTACAGCATACAACAt                                                                       <  2:798965/141‑1 (MQ=14)

                                                                       ggggACAGAAATGATTTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAtt                                                                      <  2:1074671/140‑1 (MQ=255)

                                                                            cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATTACTTCGTAGAGCATAGAACATTGAttt                                                                 >  1:1071005/1‑141 (MQ=255)

                                                                            cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAttt                                                                 >  2:1051868/1‑141 (MQ=255)

                                                                            cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAttt                                                                 >  2:400586/1‑141 (MQ=255)

                                                                                aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGt                                                             >  1:963866/1‑141 (MQ=255)

                                                                                   tatatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTAcc                                                          <  1:1284338/140‑1 (MQ=255)

                                                                                   gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTAcc                                                          <  2:677240/141‑1 (MQ=255)

                                                                                   gATATTGTCGCAAATTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTAcc                                                          <  2:121280/141‑1 (MQ=255)

                                                                                     tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg                                                        <  2:153014/141‑1 (MQ=255)

                                                                                     tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg                                                        <  2:1106580/141‑1 (MQ=255)

                                                                                     tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg                                                        <  1:86126/141‑1 (MQ=255)

                                                                                      atTTTCGCAAAATTGATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc                                                       <  1:430297/141‑1 (MQ=255)

                                                                                      atTTTCGCAAAATGTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc                                                       <  2:1120485/141‑1 (MQ=255)

                                                                                      atTTCCGCAAAATTTATTTTGTCGTCCCACCCCAGCAAGGTTGACAAGAAAAGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc                                                       <  2:1041229/141‑1 (MQ=17)

                                                                                       ttttCGCAAAATTTATTTGGTCGTCAGACCCCATCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                      <  2:835392/141‑1 (MQ=255)

                                                                                       ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                      <  2:1265544/141‑1 (MQ=255)

                                                                                       ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                      <  2:455314/141‑1 (MQ=255)

                                                                                       ttttCGCAAAATTTATTACGTCGTCCCACCCCACCAATGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                      <  2:743893/141‑1 (MQ=255)

                                                                                       ttttCGCAAAATTTATGTCGTCGCCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                      <  2:809979/141‑1 (MQ=255)

                                                                                       ttttCGCAAAATTGATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                      <  2:840074/141‑1 (MQ=255)

                                                                                          tCGCCAACTTTATTTCGTCGTCCCGCCCCAGTCATGTTGACTAAAAATAAAAAAAGCTTGTTACAAGCGCATTTTCGGTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa                                                   <  2:223295/141‑1 (MQ=17)

                                                                                          tCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa                                                   <  1:42484/141‑1 (MQ=255)

                                                                                              aaaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                               >  2:1255954/1‑141 (MQ=255)

                                                                                              aaaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                               <  1:222555/141‑1 (MQ=255)

                                                                                              aaaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                               >  2:1329516/1‑141 (MQ=255)

                                                                                              aaaaGTTATTTCGTCGGCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTTTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                               <  2:135999/141‑1 (MQ=255)

                                                                                               aaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACTTTGATTTATGTACAAGCCTGATCAAc                                              >  2:189770/1‑141 (MQ=255)

                                                                                                      tttCGTCGTCCCACCTCAGTAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaa                                       <  2:310045/141‑1 (MQ=255)

                                                                                                        tcgtcgTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata                                     <  2:1336602/141‑1 (MQ=255)

                                                                                                          gtcgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatata                                   >  1:503170/1‑141 (MQ=255)

                                                                                                             gtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATataaatataaat                                >  1:135761/1‑141 (MQ=255)

                                                                                                                  aCCCCACAAATGTTGACTAGAATTGAAAAAACCCTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTa                           <  1:89463/141‑1 (MQ=17)

                                                                                                                   ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTAt                          >  2:1189516/1‑141 (MQ=255)

                                                                                                                     ccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGt                        <  2:534527/141‑1 (MQ=255)

                                                                                                                     ccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGt                        <  1:1064053/141‑1 (MQ=255)

                                                                                                                     ccAGCAAGGTTGACAAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGt                        <  1:768249/141‑1 (MQ=255)

                                                                                                                      cAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGtt                       <  1:99722/141‑1 (MQ=255)

                                                                                                                      cAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGtt                       <  1:576747/141‑1 (MQ=255)

                                                                                                                      cAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGtt                       <  1:464178/141‑1 (MQ=255)

                                                                                                                        gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGtttt                     >  1:213805/1‑140 (MQ=255)

                                                                                                                        gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTc                     >  1:522506/1‑141 (MQ=255)

                                                                                                                            ggTTGACTAGAATTGAAAAAAGCTTGTTTCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGt                 <  1:1332144/141‑1 (MQ=255)

                                                                                                                            ggTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGt                 <  2:1195441/141‑1 (MQ=255)

                                                                                                                                           aaaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAg  <  1:787356/141‑1 (MQ=255)

GCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAG  >  USA300TCH1516_ALE/2866708‑2866987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.