Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	851001	851027	27	2 [1]	[1] 2	whiA	Putative sporulation transcription regulator WhiA

TTTTAAATAAGAAAGGAATGACTGTACGATGAGCTTTGCATCAGAAATGAAAAATGAATTAACTAGAATAGACGTCGATGAAATGAATGCAAAAGCAGAGCTCAGTGCACTGATTCGAATGAATGGTGCACTTAGTCTTTCAA  >  USA300TCH1516_ALE/850860‑851002                                                                                                                                             |   ttttAAATAAGAAAGGAATGACTGTACGATGAGCTTTGCATCAGAAATGAAAAATGAATTAACTAGAATAGACGTCGATGAAATGAATGCAAAAGCAGAGCTCAGTGCACTGATTCGAATGAATGGTGCACTTAGTCTTTc    <  2:45106/141‑1 (MQ=255)   ttAAATAAGAAAGGAATGACTGTACGATGAGCTTTGCATCAGAAATGAAAAATGAATTAACTAGAATAGACGTCGATGAAATGAATGCAAAAGCAGAGCTCAGTGCACTGATTCGAATGAATGGTGCACTTAGTCTTTCaa  >  1:2084/1‑141 (MQ=255)                                                                                                                                             |   TTTTAAATAAGAAAGGAATGACTGTACGATGAGCTTTGCATCAGAAATGAAAAATGAATTAACTAGAATAGACGTCGATGAAATGAATGCAAAAGCAGAGCTCAGTGCACTGATTCGAATGAATGGTGCACTTAGTCTTTCAA  >  USA300TCH1516_ALE/850860‑851002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑