Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	884532	884627	96	2 [1]	[1] 2	[USA300HOU_RS04330]	[USA300HOU_RS04330]

TTATTTCATCATTTCTTATCGAAAATGGTGTAATAATGTCTTTATCTAACCAAGTGTTGATAAGTTCATTTGGTACACCATCTAACAACATTTCACTTTTACTAATTATAAAACATTCCCAGTCAAGTGAAACATTTTGTGGA  >  USA300TCH1516_ALE/884391‑884533                                                                                                                                             |   ttATTTCATCATTTCTTATCGAAAATGGTGTAATAATGTCTTTATCTAACCAAGTGTTGATAAGTTCATTTGGTACACCATCTAACAACATTTCACTTTTACTAATTATAAAACATTCCCAGTCAAGTGAAACATTTtgtg    >  1:35842/1‑141 (MQ=255)   aTTTCATCATTTCTTATCGAAAATGGTGTAATAATGTCTTTATCTAACCAAGTGTTGATAAGTTCATTTGGTACACCATCTAACAACATTTCACCTTTACTAATTATAAAACATTCCCAGTCAAGTGAAACATTTTGTGGa  >  2:14139/1‑141 (MQ=255)                                                                                                                                             |   TTATTTCATCATTTCTTATCGAAAATGGTGTAATAATGTCTTTATCTAACCAAGTGTTGATAAGTTCATTTGGTACACCATCTAACAACATTTCACTTTTACTAATTATAAAACATTCCCAGTCAAGTGAAACATTTTGTGGA  >  USA300TCH1516_ALE/884391‑884533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑