Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	944782	944869	88	2 [1]	[1] 2	mnhD1_2	Na(+)/H(+) antiporter subunit D1

GCACTGAATATGTCTAATACAAAGACAATACTGTATGGTGCTTTCCATGAACCTAGCTCTACGCGTATTGGTCCATGTTTAACAACATTTGCTAAATTGATAATTGCCGCGACCAAGGTTAATAATGTACCGCCTAGTGCGACATAA  >  USA300TCH1516_ALE/944641‑944787                                                                                                                                             |       gCACTGAATATGTCTAATACAAAGACAATACTGTATGGTGCTTTCCATGAACCTAGCTCTACGCGTATTGGTCCATGTTTAACAACATTTGCTAAATTGATAATTGCCGCGACCAAGGTTAATAATGTACCGCCTAGTGCg        <  1:7194/141‑1 (MQ=255)       aaTATGTCTAATACAAAGACAATACTGTATGGTGCTTTCCATGAACCTAGCTCTACGCGTATTGGTCCATGTTTAACAACATTTGCTAAATTGATAATTGCCGCGACCAAGGTTAATAATGTACCGCCTAGTGCGACATaa  <  1:27299/141‑1 (MQ=255)                                                                                                                                             |       GCACTGAATATGTCTAATACAAAGACAATACTGTATGGTGCTTTCCATGAACCTAGCTCTACGCGTATTGGTCCATGTTTAACAACATTTGCTAAATTGATAATTGCCGCGACCAAGGTTAATAATGTACCGCCTAGTGCGACATAA  >  USA300TCH1516_ALE/944641‑944787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑