Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	949717	949783	67	2 [1]	[1] 2	yugI_2	General stress protein 13

TCGATTTGTGCTATGATAATAGTGTTAAGTAAACGAAATAAGGGGTTATTAAGTTGAATAACTACAAAATTGGCCAACATATCAAGGTGCGTGTAACTGGTATTCAACCATACGGTGCGTTTGTTGAGACCCCTAATCATACTGAA  >  USA300TCH1516_ALE/949576‑949721                                                                                                                                             |      tCGATTTGTGCTATGATAATAGTGTTAAGTAAACGAAATAAGGGGTTATTAAGTTGAATAACTACAAAATTGGCCAACATATCAAGGTGCGTGTAACTGGTATTCAACCATACGGTGCGTTTGTTGAGACCCCTAATCATa       >  2:61119/1‑141 (MQ=255)      ttGTGCTATGATAATAGTGTTAAGTAAACGAAATAAGGGGTTATTAAGTTGAATAACTACAAAATTGGCCAACATATCAAGGTGCGTGTAACTGGTATTCAACCATACGGTGCGTTTGTTGAGACCCCTAATCATACTGaa  <  2:62518/141‑1 (MQ=255)                                                                                                                                             |      TCGATTTGTGCTATGATAATAGTGTTAAGTAAACGAAATAAGGGGTTATTAAGTTGAATAACTACAAAATTGGCCAACATATCAAGGTGCGTGTAACTGGTATTCAACCATACGGTGCGTTTGTTGAGACCCCTAATCATACTGAA  >  USA300TCH1516_ALE/949576‑949721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑