Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1020360	1020408	49	2 [1]	[1] 2	ltaA	putative glycolipid permease LtaA

TACCACCAATAATGATTGCAACAGTATATTCAATTGTGCTTACGTTAATAACCTTAGTAGCATATGTTGGTAATATAGGAACTAGGGCAGCAATTGCGGCACCTTGTAAAAGAATACCAGGGAACAACAATAAATGGCGCTT  >  USA300TCH1516_ALE/1020219‑1020360                                                                                                                                             |  tACCACCAATAATGATTGCAACAGTATATTCAATTGTGCTTACGTTAATAACCTTAGTAGCATATGTTGGTAATATAGGAACTAGGGCAGCAATTGCGGCACCTTGTAAAAGAATACCAGGGAACAACAATAAATGGCGCt   >  2:63473/1‑141 (MQ=255)  accaccAATAATGATTGCAACAGTATATTCAATTGTGCTTACGTTAATAACCTTAGTAGCATATGTTGGTAATATAGGACCTAGGGCAGCAATTGCGGCACCTTGTAAAAGAATACCAGGGAACAACAATAAATGGCGCtt  <  1:22801/141‑1 (MQ=255)                                                                                                                                             |  TACCACCAATAATGATTGCAACAGTATATTCAATTGTGCTTACGTTAATAACCTTAGTAGCATATGTTGGTAATATAGGAACTAGGGCAGCAATTGCGGCACCTTGTAAAAGAATACCAGGGAACAACAATAAATGGCGCTT  >  USA300TCH1516_ALE/1020219‑1020360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑