Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1129667	1129753	87	2 [1]	[1] 2	USA300HOU_RS05585	hypothetical protein

AATACTTTTTAGGTGGTTGATTGATGAAAAAGTTAATTATAAGAGTCGTCGGTGTATTATTTTTAGTTGGATTTTTAATATATCTTTTTTATTCACCGAGATTAAAATTTGATGTATTAGAGAACCCGAATAAAGGTAATAAAG  >  USA300TCH1516_ALE/1129526‑1129669                                                                                                                                             |    aaTACTTTTTAGGTGGTTGATTGATGAAAAAGTTAATTATAAGAGTCGTCGGTGTATTATTTTTAGTTGGATTTTTAATATATCTTTTTTATTCACCGAGATTAAAATTTGATGTATTAGAGAACCCGAATAAAGGtaata     >  1:30079/1‑141 (MQ=255)    aCTTTTTAGGTGGTTGATTGATGAAAAAGTTAATTATAAGAGTCGTCGGTGTATTATTTTTAGTTGGATTTTTAATATATCTTTTTTATTCACCGAGATTAAAATTTGATGTATTAGAGAACCCGAATAAAGGTAATAAAg  <  1:11621/141‑1 (MQ=255)                                                                                                                                             |    AATACTTTTTAGGTGGTTGATTGATGAAAAAGTTAATTATAAGAGTCGTCGGTGTATTATTTTTAGTTGGATTTTTAATATATCTTTTTTATTCACCGAGATTAAAATTTGATGTATTAGAGAACCCGAATAAAGGTAATAAAG  >  USA300TCH1516_ALE/1129526‑1129669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑