Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1131282	1131370	89	2 [1]	[1] 2	glpQ1	putative glycerophosphodiester phosphodiesterase 1

TGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTA  >  USA300TCH1516_ALE/1131141‑1131333                                                                                                                                             |                                                     tGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGcc                                                      >  2:29013/1‑141 (MQ=255)                                                     aGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGtaccta  <  1:11682/141‑1 (MQ=255)                                                                                                                                             |                                                     TGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTA  >  USA300TCH1516_ALE/1131141‑1131333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑