Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1135796	1135824	29	2 [1]	[1] 2	USA300TCH1516_01057	hypothetical protein

AAAGATGGTATGGTTAATCTTCAGGATATTGTCGAGGATATAGTTATTATTGAGAAACCAATGAGAGCTTATTCAGAGCAAAGTGACCAAATGTTGACAGTAGGTAATGGTTGGGAAGTAATCGATGAGGATCAATTAGATGAGCT  >  USA300TCH1516_ALE/1135655‑1135800                                                                                                                                             |      aaaGATGGTATGGTTAATCTTCAGGATATTGTCGAGGATATAGTTATTATTGAGAAACCAATGAGAGCTTATTCAGAGCAAAGTGACCAAATGTTGACAGTAGGTAATGGTTGGGAAGTAATCGATGAGGATCAATTAGAt       <  2:19914/141‑1 (MQ=255)      tggtatggtTAATCTTCAGGATATTGTCGAGGATATAGTTATTATTGAGAAACCAATGAGAGCTTATTCAGAGCAAAGTGACCAAATGTTGACAGTAGGTAATGGTTGGGAAGTAATCGATGAGGATCAATTAGATGAGCt  <  2:4753/141‑1 (MQ=255)                                                                                                                                             |      AAAGATGGTATGGTTAATCTTCAGGATATTGTCGAGGATATAGTTATTATTGAGAAACCAATGAGAGCTTATTCAGAGCAAAGTGACCAAATGTTGACAGTAGGTAATGGTTGGGAAGTAATCGATGAGGATCAATTAGATGAGCT  >  USA300TCH1516_ALE/1135655‑1135800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑