Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1139425	1139585	161	2 [1]	[1] 2	[isdA]	[isdA]

AATTGGTTGTGATGTTGCTTGAGAAACTTGTGTGCTTTGATTATTAGTTGCGTTCGTAGCTTCTGTTGCCGCATTGACTTGTTGGCTGTCTGCGCCTATGTATACAAGGGAACCTAAAATGATAGATGCTGTACCCATTGTAATCTTTTTCATAGCTGATGAACGTTGTTCTGATTGATACTTACTGTTTAAATAATGTTTTGTCATGTTGTTTTCCT  >  USA300TCH1516_ALE/1139284‑1139501                                                                                                                                             |                                                                              aattGGTTGTGATGTTGCTTGAGAAACTTGTGTGCTTTGATTATTAGTTGCGTTCGTAGCTTCTGTTGCCGCATTGACTTGTTGGCTGTCTGCGCCTATGTATACAAGGGAACCTAAAATGATAGATGCTGTACCCATTGt                                                                               <  1:32818/141‑1 (MQ=255)                                                                              cTTGTTGGCTGTCTGCGCCTATGTATACAAGGGAACCTAAAATGATAGATGCTGTACCCATTGTAATCTTTTTCATAGCTGATGAACGTTGTTCTGATTGATACTTACTGTTTAAATAATGTTTTGTCATGTTGTTTtcct  <  2:7982/141‑1 (MQ=255)                                                                                                                                             |                                                                              AATTGGTTGTGATGTTGCTTGAGAAACTTGTGTGCTTTGATTATTAGTTGCGTTCGTAGCTTCTGTTGCCGCATTGACTTGTTGGCTGTCTGCGCCTATGTATACAAGGGAACCTAAAATGATAGATGCTGTACCCATTGTAATCTTTTTCATAGCTGATGAACGTTGTTCTGATTGATACTTACTGTTTAAATAATGTTTTGTCATGTTGTTTTCCT  >  USA300TCH1516_ALE/1139284‑1139501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑