Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1147547	1147611	65	2 [1]	[1] 2	pheT_1	Phenylalanine‑‑tRNA ligase beta subunit

TACCGAAAAGTTTTGAATCAGGCATTTATGTATTTAGTGAAGCCCAAGTTCCAGGAACAGATGCCTTACAAGCTTTATATTTAGATGATCAAGTAATGGAATTTGATTTAACGCCGAATCGTGCAGATGCTTTAAGTATGATAGGTACTGCTTATGAAGTTGCAGCATTATATAATACAAAA  >  USA300TCH1516_ALE/1147406‑1147587                                                                                                                                             |                                          taCCGAAAAGTTTTGAATCAGGCATTTATGTATTTAGTGAAGCCCAAGTTCCAGGAACAGATGCCTTACAAGCTTTATATTTAGATGATCAAGTAATGGAATTTGATTTAACGCCGAATCGTGCAGATGCTTTAAGTATGa                                           <  1:45059/141‑1 (MQ=255)                                          gCCCAAGTTCCAGGAACAGATGCCTTACAAGCTTTATATTTAGATGATCAAGTAATGGAATTTGATTTAACGCCGAATCGTGCAGATGCTTTAAGTATGATAGGTACTGCTTATGAAGTTGCAGCATTATATAATACaaaa  >  2:51075/1‑141 (MQ=255)                                                                                                                                             |                                          TACCGAAAAGTTTTGAATCAGGCATTTATGTATTTAGTGAAGCCCAAGTTCCAGGAACAGATGCCTTACAAGCTTTATATTTAGATGATCAAGTAATGGAATTTGATTTAACGCCGAATCGTGCAGATGCTTTAAGTATGATAGGTACTGCTTATGAAGTTGCAGCATTATATAATACAAAA  >  USA300TCH1516_ALE/1147406‑1147587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑