Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1151273	1151333	61	2 [1]	[1] 2	USA300HOU_RS05710	hypothetical protein

TCACAAATTGCAGCAGCGTGAGCAATAAATGGTCATTGATTTTATCATAATCATTTTCTTTGTGTATTTTGTCATCGTTGGATTCAGACGAGGTTTTTGGTTATCTATGATACATTTGAGTGCAACGATTGTATCATTGTGGATTGCCAGTCAATTTT  >  USA300TCH1516_ALE/1151132‑1151289                                                                                                                                             |                  tCACAAATTGCAGCAGCGTGAGCAATAAATGGTCATTGATTTTATCATAATCATTTTCTTTGTGTATTTTGTCATCGTTGGATTCAGACGAGGTTTTTGGTTATCTATGATACATTTGAGTGCAACGATTGTATCATtgtg                   <  2:58645/141‑1 (MQ=255)                  gTGAGCAATAAATGGTCATTGATTTTATCATAATCATTTTCTTTGTGTATTTTGTCATCGTTGGATTCAGACGAGGTTTTTGGTTATCTATGATACATTTGAGTGCAACGATTGTATCATTGTGGATTGCCAGTCAAtttt  <  1:20119/141‑1 (MQ=255)                                                                                                                                             |                  TCACAAATTGCAGCAGCGTGAGCAATAAATGGTCATTGATTTTATCATAATCATTTTCTTTGTGTATTTTGTCATCGTTGGATTCAGACGAGGTTTTTGGTTATCTATGATACATTTGAGTGCAACGATTGTATCATTGTGGATTGCCAGTCAATTTT  >  USA300TCH1516_ALE/1151132‑1151289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑