Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1153178	1153250	73	2 [1]	[1] 2	polX	DNA polymerase/3'‑5' exonuclease PolX

TTATGTAATTGGAGCTATTCATCAAAGCTTTAACCAATCAGAAGAACAAATTATGGAACGATTAGCTAATGCATGTCGCAATCCATACGTGCGACATATAGCGCATCCAACAGGGCGTATTATAGGTAGAAGAGATGGTTATAAACCGAATATTGAACAATTAATGGCATTAG  >  USA300TCH1516_ALE/1153037‑1153209                                                                                                                                             |                                 ttATGTAATTGGAGCTATTCATCAAAGCTTTAACCAATCAGAAGAACAAATTATGGAACGATTAGCTAATGCATGTCGCAATCCATACGTGCGACATATAGCGCATCCAACAGGGCGTATTATAGGTAGAAGAGATGGTta                                  >  2:36216/1‑141 (MQ=255)                                 aCCAATCAGAAGAACAAATTATGGAACGATTAGCTAATGCATGTCGCAATCCATACGTGCGACATATAGCGCATCCAACAGGGCGTATTATAGGTAGAAGAGATGGTTATAAACCGAATATTGAACAATTAATGGCATTAg  >  2:62607/1‑141 (MQ=255)                                                                                                                                             |                                 TTATGTAATTGGAGCTATTCATCAAAGCTTTAACCAATCAGAAGAACAAATTATGGAACGATTAGCTAATGCATGTCGCAATCCATACGTGCGACATATAGCGCATCCAACAGGGCGTATTATAGGTAGAAGAGATGGTTATAAACCGAATATTGAACAATTAATGGCATTAG  >  USA300TCH1516_ALE/1153037‑1153209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑