Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1216585	1216660	76	2 [1]	[1] 2	pyrF	Orotidine 5'‑phosphate decarboxylase

GATACAAAAATTATTGCAGTAACACAGCTTACGTCAACAACAGAAGACATGTTACGACACGAACAAAATATACAAACATCGATTGAAGAGGCCGTTTTAAATTATGCCAAGTTAGCAAATGCAGCTGGTTTAGATGGCGTTGTTTGTTCACC  >  USA300TCH1516_ALE/1216444‑1216595                                                                                                                                             |            gATACAAAAATTATTGCAGTAACACAGCTTACGTCAACAACAGAAGACATGTTACGACACGAACAAAATATACAAACATCGATTGAAGAGGCCGTTTTAAATTATGCCAAGTTAGCAAATGCAGCTGGTTTAGATGGCgtt             <  1:23133/141‑1 (MQ=255)            tattGCAGTAACACAGCTTACGTCAACAACAGAAGACATGTTACGACACGAACAAAATATACAAACATCGATTGAAGAGGCCGTTTTAAATTATGCCAAGTTAGCAAATGCAGCTGGTTTAGATGGCGTTGTTTGTTCAcc  <  2:14918/141‑1 (MQ=255)                                                                                                                                             |            GATACAAAAATTATTGCAGTAACACAGCTTACGTCAACAACAGAAGACATGTTACGACACGAACAAAATATACAAACATCGATTGAAGAGGCCGTTTTAAATTATGCCAAGTTAGCAAATGCAGCTGGTTTAGATGGCGTTGTTTGTTCACC  >  USA300TCH1516_ALE/1216444‑1216595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑