Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1243450	1243541	92	2 [1]	[1] 2	plsX	Phosphate acyltransferase

TAGTACTAAAAATAAATTAGCAGGTGCAATATTGAAGAAAGATTTAGCTGAATTCGCTAAAAAGATGGATTACTCAGAATACGGTGGTTCCGTATTATTAGGATTGGAAGGTACTGTAGTTAAAGCACACGGTAGTTCAAATGCTAAA  >  USA300TCH1516_ALE/1243309‑1243456                                                                                                                                             |        tagtaCTAAAAATAAATTAGCAGGTGCAATATTGAAGAAAGATTTAGCTGAATTCGCTAAAAAGATGGATTACTCAGAATACGGTGGTTCCGTATTATTAGGATTGGAAGGTACTGTAGTTAAAGCACACGGTAGTTCaaa         <  2:60212/141‑1 (MQ=255)        aaaaaTAAATTAGCAGGTGCAATATTGAAGAAAGATTTAGCTGAATTCGCTAAAAAGATGGATTACTCAGAATACGGTGGTTCCGTATTATTAGGATTGGAAGGTACTGTAGTTAAAGCACACGGTAGTTCAAATGCTaaa  <  1:15833/141‑1 (MQ=255)                                                                                                                                             |        TAGTACTAAAAATAAATTAGCAGGTGCAATATTGAAGAAAGATTTAGCTGAATTCGCTAAAAAGATGGATTACTCAGAATACGGTGGTTCCGTATTATTAGGATTGGAAGGTACTGTAGTTAAAGCACACGGTAGTTCAAATGCTAAA  >  USA300TCH1516_ALE/1243309‑1243456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑