Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1252217	1252245	29	2 [1]	[1] 2	ffh	Signal recognition particle protein

CGCAGTTGATGGGTGGAGAAAATACGTCGATTAATATGTCAAATAAACCACCTACTGTTGTTATGATGGTTGGTTTACAAGGTGCTGGTAAAACAACAACTGCAGGTAAATTAGCATTATTGATGCGTAAAAAATACAACAAAAAACC  >  USA300TCH1516_ALE/1252076‑1252223                                                                                                                                             |        cGCAGTTGATGGGTGGAGAAAATACGTCGATTAATATGTCAAATAAACCACCTACTGTTGTTATGATGGTTGGTTTACAAGGTGCTGGTAAAACAACAACTGCAGGTAAATTAGCATTATTGATGCGTAAAAAATacaaca         <  2:38181/141‑1 (MQ=255)        gATGGGGGGAGAAAATACGTCGATTAATATGTCAAATAAACCACCTACTGTTGTTATGATGGTTGGTTTACAAGGTGCTGGTAAAACAACAACTGCAGGTAAATTAGCATTATTGATGCGTAAAAAATACAACAAAAAAcc  <  2:58741/141‑1 (MQ=255)                                                                                                                                             |        CGCAGTTGATGGGTGGAGAAAATACGTCGATTAATATGTCAAATAAACCACCTACTGTTGTTATGATGGTTGGTTTACAAGGTGCTGGTAAAACAACAACTGCAGGTAAATTAGCATTATTGATGCGTAAAAAATACAACAAAAAACC  >  USA300TCH1516_ALE/1252076‑1252223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑