Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1254222	1254264	43	2 [1]	[0] 2	rimM	Ribosome maturation factor RimM

AGGTAATAGAATGAGAGTTGAAGTTGGTCAAATTGTTAACACACATGGTATTAAAGGTGAAATTAAAGTAAAATCCAATTCAGACTTTACAGACGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTGCATAACAATAACGACCTTGAATATACTGTTAAGTCACATAGAGTGCATA  >  USA300TCH1516_ALE/1254081‑1254259                                                                                                                                             |                                       aGGTAATAGAATGAGAGTTGAAGTTGGTCAAATTGTTAACACACATGGTATTAAAGGTGAAATTAAAGTAAAATCCAATTCAGACTTTACAGACGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTGCATAACAATaa                                        >  1:22000/1‑141 (MQ=255)                                       acacgcATGGTATTAAAGGTGAAATTAAAGTAAAATCCAATTCAGACGTTTCAGCCGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTGCAGAACAATAACGACCGTGAATATACTGTTAAGTCACATAGAGTGCATa  <  2:12345/141‑1 (MQ=255)                                                                                                                                             |                                       AGGTAATAGAATGAGAGTTGAAGTTGGTCAAATTGTTAACACACATGGTATTAAAGGTGAAATTAAAGTAAAATCCAATTCAGACTTTACAGACGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTGCATAACAATAACGACCTTGAATATACTGTTAAGTCACATAGAGTGCATA  >  USA300TCH1516_ALE/1254081‑1254259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑