Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1261244	1261258	15	2 [1]	[0] 2	sucC	Succinate‑‑CoA ligase [ADP‑forming] subunit beta

TACGTTGGATTCGTTATTGATCGTGCGACTGACCAAGTAACATTGATGGCGTCTGAAGAAGGGGGCACTGAGATTGAAGAAGTTGCTGCGAAGACTCCTGAAAAGATCTTCAAAGAAACTATCGATCCAGTAATCGGACTTTCA  >  USA300TCH1516_ALE/1261103‑1261246                                                                                                                                             |    tACGTTGGATTCGTTATTGATCGTGCGACTGACCAAGTAACATTGATGGCGTCTGAAGAAGGGGGCACTGAGATTGAAGAAGTTGCTGCGAAGACTCCTGAAAAGATCTTCAAAGAAACTATCGATCCAGTAATCGGACtt     <  2:35660/141‑1 (MQ=255)    gTTGGATTCGTTATTGATCGTGCGACTGACCAAGTAACATTGATGGCGTCTGAAGAAGGGGGCACTGAGATTGAAGAAGTTGCTGCGAAGACTCCTGAAAAGTTCTTCAAAGAAACTATCGATCCAGTAATCGGACTTTCa  <  2:21769/141‑1 (MQ=255)                                                                                                                                             |    TACGTTGGATTCGTTATTGATCGTGCGACTGACCAAGTAACATTGATGGCGTCTGAAGAAGGGGGCACTGAGATTGAAGAAGTTGCTGCGAAGACTCCTGAAAAGATCTTCAAAGAAACTATCGATCCAGTAATCGGACTTTCA  >  USA300TCH1516_ALE/1261103‑1261246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑