Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1298691	1298765	75	2 [1]	[1] 2	rnj2	Ribonuclease J 2

GGTATATTCCTTACACACGGACATGAGCACGCGATTGGTGCAGTGAGTTATGTTTTAGAACAATTAGATGCACCAGTATATGGATCTAAATTGACAATAGCGTTAATTAAAGAAAATATGAAAGCCCGTAATATTGATAAAAAAGTTCGC  >  USA300TCH1516_ALE/1298550‑1298699                                                                                                                                             |          ggTATATTCCTTACACACGGACATGAGCACGCGATTGGTGCAGTGAGTTATGTTTTAGAACAATTAGATGCACCAGTATATGGATCTAAATTGACAATAGCGTTAATTAAAGAAAATATGAAAGCCCGTAATATTGATaaa           <  2:15085/141‑1 (MQ=255)          cTTACACACGGACATGAGCACGCGATTGGTGCAGTGAGTTATGTTTTAGAACAATTAGATGCACCAGTATATGGATCTAAATTGACAATAGCGTTAATTAAAGAAAATATGAAAGCCCGTAATATTGATAAAAAAGTTCGc  <  1:50044/141‑1 (MQ=255)                                                                                                                                             |          GGTATATTCCTTACACACGGACATGAGCACGCGATTGGTGCAGTGAGTTATGTTTTAGAACAATTAGATGCACCAGTATATGGATCTAAATTGACAATAGCGTTAATTAAAGAAAATATGAAAGCCCGTAATATTGATAAAAAAGTTCGC  >  USA300TCH1516_ALE/1298550‑1298699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑