Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1338957	1339018	62	2 [1]	[1] 2	glnA/USA300TCH1516_01240	Glutamine synthetase/hypothetical protein

TTTTATAGTATTAAAAGTTTTCTAAAAGTGAAAGAAATCATGTTTAGTGATTTACTTATGTTTTTCAAAATAGTATAATAATTTTATATAATATATAGAGCTTCAGTATACCTTTTGAGTATATATGGAGTTCTTTCTTTTTATACAAGATGTATA  >  USA300TCH1516_ALE/1338816‑1338971                                                                                                                                             |                ttttATAGTATTAAAAGTTTTCTAAAAGTGAAAGAAATCATGTTTAGTGATTTACTTATGTTTTTCAAAATAGTATAATAATTTTATATAATATATAGAGCTTCAGTATACCTTTTGAGTATATATGGAGTTCTTTCtttt                 >  2:22686/1‑141 (MQ=255)                aGTTTTCTAAAAGTGAAAGAAATCATGTTTAGTGATTTACTTATGTTTTTCAAAATAGTATAATAATTTTATATAATATATAGAGCTTCAGTATACCTTTTGAGTATATATGGAGTTCTTTCTTTTTATACAAGatgtata  >  1:23682/1‑141 (MQ=255)                                                                                                                                             |                TTTTATAGTATTAAAAGTTTTCTAAAAGTGAAAGAAATCATGTTTAGTGATTTACTTATGTTTTTCAAAATAGTATAATAATTTTATATAATATATAGAGCTTCAGTATACCTTTTGAGTATATATGGAGTTCTTTCTTTTTATACAAGATGTATA  >  USA300TCH1516_ALE/1338816‑1338971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑