Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1383353	1383394	42	2 [1]	[1] 2	acnA	Aconitate hydratase A

TTAATTCATATGGTTCAAGACGTGGTAATCACGAAGTAATGGTTCGAGGTACGTTTGCTAATATACGTATTAAAAACCAATTAGCGCCAGGTACTGAAGGTGGTTTTACAACTTATTGGCCAACAAATGAAGTAATGCCTATCTTTGATGCTGCAATG  >  USA300TCH1516_ALE/1383212‑1383369                                                                                                                                             |                  ttAATTCATATGGTTCAAGACGTGGTAATCACGAAGTAATGGTTCGAGGTACGTTTGCTAATATACGTATTAAAAACTAATTAGCGCCAGGTACTGAAGGTGGTTTTACAACTTATTGGCAAACAAATGAAGTACTGCCTa                   >  2:35236/1‑141 (MQ=255)                  aGACGTGGTAATCACGAAGTAATGGTTCGAGGTACGTTTGCTAATATACGTATTAAAAACCAATTAGCGCCAGGTACTGAAGGTGGTTTTACAACTTATTGGCCAACAAATGAAGTAATGCCTATCTTTGATGCTGCAATg  <  2:288/141‑1 (MQ=255)                                                                                                                                             |                  TTAATTCATATGGTTCAAGACGTGGTAATCACGAAGTAATGGTTCGAGGTACGTTTGCTAATATACGTATTAAAAACCAATTAGCGCCAGGTACTGAAGGTGGTTTTACAACTTATTGGCCAACAAATGAAGTAATGCCTATCTTTGATGCTGCAATG  >  USA300TCH1516_ALE/1383212‑1383369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑