Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1408515	1408689	175	2 [1]	[1] 2	trpF	N‑(5'‑phosphoribosyl)anthranilate isomerase

TTTTATACAGGAAATTAAAAAGAAATATTCAAGCATTAAAATCACTAAAGCTTTAGCTGCAGATGAAAACATAATCCAAAACATAAATAAATATAAAGGGTTCGTAGATTTATTTATTATCGACACACCCTCAGTGTCGTATGGTGGTACCGGTCAAACATATGACTGGAC  >  USA300TCH1516_ALE/1408374‑1408544                                                                                                                                             |                               ttttATACAGGAAATTAAAAAGAAATATTCAAGCATTAAAATCACTAAAGCTTTAGCTGCAGATGAAAACATAATCCAAAACATAAATAAATATAAAGGGTTCGTAGATTTATTTATTATCGACACACCCTCAGTGTCGTa                                <  1:35835/141‑1 (MQ=255)                               aaGCATTAAAATCACTAAAGCTTTAGCTGCAGATGAAAACATAATCCAAAACATAAATAAATATAAAGGGTTCGTAGATTTATTTATTATCGACACACCCTCAGTGTCGTATGGTGGTACCGGTCAAACATATGACTGGAc  >  2:21171/1‑141 (MQ=255)                                                                                                                                             |                               TTTTATACAGGAAATTAAAAAGAAATATTCAAGCATTAAAATCACTAAAGCTTTAGCTGCAGATGAAAACATAATCCAAAACATAAATAAATATAAAGGGTTCGTAGATTTATTTATTATCGACACACCCTCAGTGTCGTATGGTGGTACCGGTCAAACATATGACTGGAC  >  USA300TCH1516_ALE/1408374‑1408544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑