Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1464561	1464668	108	2 [1]	[1] 2	[USA300HOU_RS07285]	[USA300HOU_RS07285]

AGAGCCATCTTTTCCTAGTTCTTCATAAGCAGATATAAATTCACCTATGGCTGGCTGACTTGTCTTTACATCTTCATCATTTTCAATATGATTAATAAATTCTTCTGATGTAATATCTACTTGGTCAACGTATGAAGCTCCTTCAATAGTTAAACTTAAAGGAATTACATGAATGTTGTTTGCTTCTAAG  >  USA300TCH1516_ALE/1464420‑1464609                                                                                                                                             |                                                  agagCCATCTTTTCCTAGTTCTTCATAAGCAGATATAAATTCACCTATGGCTGGCTGACTTGTCTTTACATCTTCATCATTTTCAATATGATTAATAAATTCTTCTGATGTAATATCTACTTGGTCAACGTATGAAGCTcc                                                   <  2:24093/141‑1 (MQ=255)                                                  gctggctgACTTGTCTTTACATCTTCATCATTTTCAATATGATTAATAAATTCTTCTGATGTAATATCTACTTGGTCAACGTATGAAGCTCCTTCAATAGTTAAACTTAAAGGAATTACATGAATGTTGTTTGCTTCTAAg  <  1:45908/141‑1 (MQ=255)                                                                                                                                             |                                                  AGAGCCATCTTTTCCTAGTTCTTCATAAGCAGATATAAATTCACCTATGGCTGGCTGACTTGTCTTTACATCTTCATCATTTTCAATATGATTAATAAATTCTTCTGATGTAATATCTACTTGGTCAACGTATGAAGCTCCTTCAATAGTTAAACTTAAAGGAATTACATGAATGTTGTTTGCTTCTAAG  >  USA300TCH1516_ALE/1464420‑1464609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑