Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1574104	1574210	107	2 [1]	[1] 2	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

TTTTGGTCTTCTCTAAAGTTAGACCACCAACTTTTAAGGCCATTCCACCACTTTTCAGTATTTTTATATACACGTCCACTGGATAAATCCATTTCTTTATCAATATCTTTATTTTGCTTTTTAACAACATCTACTACAGCATCTTTTTTAGATTTTGCTTTT  >  USA300TCH1516_ALE/1573963‑1574124                                                                                                                                             |                      ttttGGTCTTCTCTAAAGTTAGACCACCAACTTTTAAGGCCATTCCACCACTTTTCAGTATTTTTATATACACGTCCACTGGATAAATCCATTTCTTTATCAATATCTTTATTTTGCTTTTTAACAACATCTACTACAGCa                       >  1:40486/1‑141 (MQ=255)                      gACCACCAACTTTTAAGGCCATTCCACCACTTTTCAGTATTTTTATATACACGTCCACTGGATAAATCCATTTCTTTATCAATATCTTTATTTTGCTTTTTAACAACATCTACTACAGCATCTTTTTTAGATTTTGCtttt  >  1:33188/1‑141 (MQ=255)                                                                                                                                             |                      TTTTGGTCTTCTCTAAAGTTAGACCACCAACTTTTAAGGCCATTCCACCACTTTTCAGTATTTTTATATACACGTCCACTGGATAAATCCATTTCTTTATCAATATCTTTATTTTGCTTTTTAACAACATCTACTACAGCATCTTTTTTAGATTTTGCTTTT  >  USA300TCH1516_ALE/1573963‑1574124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑