Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1597380	1597607	228	2 [1]	[1] 2	USA300HOU_RS07875	hypothetical protein

TTATAGGCACCACATTTCGAAATATCATTACTGCTATATGTTTCAATATCTATATTCATAAATCTCAAATTCTTGACACCTCAATTTCTTTAAAATTAAAGTGGGGCTAAAACCCCACCTATTGACTTATAAGAAATCCTCATCATCAGTGTCTAATTCATCGAAATCATCTTCTGCTGCACTTGCACCGCCAAGAGG  >  USA300TCH1516_ALE/1597239‑1597436                                                                                                                                             |                                                          ttATATGCACCACATTTCGAAATATCATTACTGCGATATGTTTCAATATCTATATTCATAAATCTCAAATTCTTGACACCTCAATTTCTTTAAAATTAAAGTGGGGCTAAAACCCCGCCTATTGACTTATAAGAAATCCtc                                                           <  2:63468/141‑1 (MQ=255)                                                          aTAAATCTCAAATTCTTGACACCTCAATTTCTTTAAAATTAAAGTGGGGCTAAAACCCCACCTATTGACTTATAAGAAATCCTCATCATCAGTGTCTAATTCATCGAAATCATCTTCTGCTGCACTTGCACCGCCAAGAgg  <  2:4957/141‑1 (MQ=255)                                                                                                                                             |                                                          TTATAGGCACCACATTTCGAAATATCATTACTGCTATATGTTTCAATATCTATATTCATAAATCTCAAATTCTTGACACCTCAATTTCTTTAAAATTAAAGTGGGGCTAAAACCCCACCTATTGACTTATAAGAAATCCTCATCATCAGTGTCTAATTCATCGAAATCATCTTCTGCTGCACTTGCACCGCCAAGAGG  >  USA300TCH1516_ALE/1597239‑1597436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑