Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1597749	1597805	57	2 [1]	[1] 2	USA300HOU_RS07875	hypothetical protein

GCTTGATGCGTTAATAAAATAAGCGTCTTGATAATTGACATCATCTTCTCTTTCAGTATCTCCATCACGTAATGGAAGTTTCAGATTTGCAGGAACTTTGCCTCCAAACTTACTAACTTTTCCTTCTTCTTTAGCAGCTTCTATAGCTTGTTCAATGGCTTTTAT  >  USA300TCH1516_ALE/1597608‑1597772                                                                                                                                             |                         gCTTGATGCGTTAATAAAATAAGCGTCTTGATAATTGACATCATCTTCTCTTTCAGTATCTCCATCACGTAATGGAAGTTTCAGATTTGCAGGAACTTTGCCGCCAAACTTACTAACTTTTCCTTCTTCTTTAGCAGCTTc                          <  1:31188/141‑1 (MQ=255)                         gTCTTGATAATTGACATCATCTTCTCTTTCAGTATCTCCATCACGTAATGGAAGTTTCAGATTTGCAGGAACTTTGCCTCCAAACTTACTAACTTTTCCTTCTTCTTTAGCAGCTTCTATAGCTTGTTCAATGGCTTTTAt  >  1:54702/1‑141 (MQ=255)                                                                                                                                             |                         GCTTGATGCGTTAATAAAATAAGCGTCTTGATAATTGACATCATCTTCTCTTTCAGTATCTCCATCACGTAATGGAAGTTTCAGATTTGCAGGAACTTTGCCTCCAAACTTACTAACTTTTCCTTCTTCTTTAGCAGCTTCTATAGCTTGTTCAATGGCTTTTAT  >  USA300TCH1516_ALE/1597608‑1597772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑