Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1597920	1597965	46	2 [1]	[1] 2	[USA300HOU_RS07875]–[USA300HOU_RS07880]	[USA300HOU_RS07875],[USA300HOU_RS07880]

TGTATCTGATTTAGGAATGATTAAACTGATTGAATACTTTGATTCTTGCCCTTCTTGCATACTGTGAGGTTCAAAAATATGTGCATATGATGCTCTTACTTTTCCTGTAATCACTTTAGTTTTATTTAATACTTTTGCTTTCATGTTTATATACCGTCCTTTTAAATT  >  USA300TCH1516_ALE/1597779‑1597946                                                                                                                                             |                            tGTATCTGATTTAGGAATGATTAAACTGATTGAATACTTTGATTCTTGCCCTTCTTGCATACTGTGAGGTTCAAAAATATGTGCATATGATGCTCTTACTTTTCCTGTAATCACTTTAGTTTTATTTAATACTTTTGCttt                             <  2:54702/141‑1 (MQ=255)                            gATTGAATACTTTGATTCTTGCCCTGCTTGCATACTGTGAGGTTCAAAAATATGTGCATATGATGCTCTTACTTTTCCTGTAATCACTTTAGTTTTATTTAATACTTTTGCTTTCATGTTTATATACCGTCCTTTTAAAtt  >  2:2312/1‑141 (MQ=255)                                                                                                                                             |                            TGTATCTGATTTAGGAATGATTAAACTGATTGAATACTTTGATTCTTGCCCTTCTTGCATACTGTGAGGTTCAAAAATATGTGCATATGATGCTCTTACTTTTCCTGTAATCACTTTAGTTTTATTTAATACTTTTGCTTTCATGTTTATATACCGTCCTTTTAAATT  >  USA300TCH1516_ALE/1597779‑1597946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑