Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1628561	1628610	50	2 [0]	[0] 2	pepT_2	Peptidase T

GCTAGGTTTTTACCCATAACGGCTAAACCAATAACTCCAATTTGTTGTGTCATATTACTTACCTCACTTGTTGATTTTTCATTAGTATTGTATCACAAAATAGACATACACTACACTAAATCATTTCGAATGTCGCGCAAC  >  USA300TCH1516_ALE/1628420‑1628560                                                                                                                                             | gCTAGGTTTTTACCCATAACGGCTAAACCAATAACTCCAATTTGTTGTGTCATATTACTTACCTCACTTGTTGATTTTTCATTAGTATTGTATCACAAAATAGACATACACTACACTAAATCATTTCGAATGTCGCGCAAc  <  1:55378/141‑1 (MQ=255) gCTAGGTTTTTACCCATAACGGCTAAACCAATAACTCCAATTTGTTGTGTCATATTACTTACCTCACTTGTTGATTTTTCATTAGTATTGTATCACAAAATAGACATACACTACACTAAATCATTTCGAATGTCGCGCAAc  <  1:58048/141‑1 (MQ=255)                                                                                                                                             | GCTAGGTTTTTACCCATAACGGCTAAACCAATAACTCCAATTTGTTGTGTCATATTACTTACCTCACTTGTTGATTTTTCATTAGTATTGTATCACAAAATAGACATACACTACACTAAATCATTTCGAATGTCGCGCAAC  >  USA300TCH1516_ALE/1628420‑1628560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑