Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1628752	1628847	96	3 [1]	[1] 2	pepT_2	Peptidase T

TCGGCATTCTCTCATTTGTTGTATGGATTTTTTCATAACCCACTCCTAAAATGACTGAAGGAATACCAAATGTATTAATAATACTGCCGTCTGAACCGCCACCAGAAATAATTGTATTTGCAGATAATCCTAAATTACGAGCACTTTC  >  USA300TCH1516_ALE/1628611‑1628758                                                                                                                                             |        tCGGCATTCTCTCATTTGTTGTATGGATTTTTTCATAACCCACTCCTAAAATGACTGAAGGAATACCAAATGTATTAATAATACTGCCGTCTGAACCGCCACCAGAAATAATTGTATTTGCAGATAATCCTAAATTACGAg         <  1:62560/141‑1 (MQ=255) tCGGCATTCTCTCATTTGTCGTATGCATTCTTTCATAACCCACTCCTAAAATGACTGAAGGAATACCAAATGTATTAATAATACTGCCGTCTGAACCGCCACCAGAAATAATTGTATTTGCAGATAATCCTAACTTACTAg         <  2:6182/141‑1 (MQ=255)        tctctcATTTGTTGTATGGATTTTTTCATAACCCACTCCTAAAATGACTGAAGGAATACCAAATGTATTAATAATACTGCCGTCTGAACCGCCACCAGAAATAATTGTATTTGCAGATAATCCTAAATTACGAGCACTTTc  >  1:13102/1‑141 (MQ=255)                                                                                                                                             |        TCGGCATTCTCTCATTTGTTGTATGGATTTTTTCATAACCCACTCCTAAAATGACTGAAGGAATACCAAATGTATTAATAATACTGCCGTCTGAACCGCCACCAGAAATAATTGTATTTGCAGATAATCCTAAATTACGAGCACTTTC  >  USA300TCH1516_ALE/1628611‑1628758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑