Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1709709	1709798	90	3 [1]	[1] 2	entA_3/fic	Enterotoxin type A/Adenosine monophosphate‑protein transferase SoFic

TTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAATTCCAAACCGTTTAACAGTATATAAGAAAAAATGATAATCATTTCTTTTATTTTTATTAAATTT  >  USA300TCH1516_ALE/1709568‑1709760                                                                                                                                             |                                                     ttattaTGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAATTCCAAACCGtt                                                      <  2:39754/141‑1 (MQ=255) ttattaTGTAGTGGTTCTTGAGCCTAAAATTTTGATTATGTAACCAGCTCATACTACTTTTCACTTTGCAATACTGTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAATTCCAAACCGtt                                                      <  1:38779/141‑1 (MQ=255)                                                     aataCTTNTTAATTATAAATACTCTGTACACAATTATTAGTTGAGTTATATCAACCAATACAAAGTATAACTAAAAATTCCAAACCGTTTAATAAAAAAAAAAAAAAAATGATAATTATTTCTTTTATTTTTATTAAAttt  <  2:48611/141‑1 (MQ=255)                                                                                                                                             |                                                     TTATTATGTAGTGGTTCTTGAGCCTACAATTTTGATTATGTATCACGCTCATAATACTTTTCAATTTGAAATACTCTGTTCGCAATTATTAGTTGAGTTATATCAACCAATACAGTGTATACCTAAAAATTCCAAACCGTTTAACAGTATATAAGAAAAAATGATAATCATTTCTTTTATTTTTATTAAATTT  >  USA300TCH1516_ALE/1709568‑1709760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑