Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1824765	1824848	84	2 [1]	[1] 2	USA300HOU_RS09080	hypothetical protein

CCTACTGGAAAATCACCAATAACGATATCTGCTTCTTCTAATGGTAGTGGCATGATGGCATCTTGAGGATACACATCGAAAGGAATTTCTAAGAAGTTTGCTAAATGTACACTAACACGTGATAAAACTGGATCAACTTCAATTAAATGATGCATAACCG  >  USA300TCH1516_ALE/1824624‑1824783                                                                                                                                             |                    ccTACTGGAAAATAACAAATAACGATCTCTGATTCTTCAAATGGAAGTGGCATGATGGCATCTTGAGGATACACATCGAAAGGAATTTCTAAGAAGTTTGCTAAATGTACACTAACACGTGATAAAACTGGATCAACTTCa                     >  2:5891/1‑141 (MQ=255)                    tAACGATATCTGCTTCTTCTAATGGTAGTGGCATGATGGCATCTTGAGGATACACATCGAAAGGAATTTCTAAGAAGTTTGCTAAATGTACACTAACACGTGATAAAACTGGATCAACTTCAATTAAATGATGCATAACCg  <  2:63152/141‑1 (MQ=255)                                                                                                                                             |                    CCTACTGGAAAATCACCAATAACGATATCTGCTTCTTCTAATGGTAGTGGCATGATGGCATCTTGAGGATACACATCGAAAGGAATTTCTAAGAAGTTTGCTAAATGTACACTAACACGTGATAAAACTGGATCAACTTCAATTAAATGATGCATAACCG  >  USA300TCH1516_ALE/1824624‑1824783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑