Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1865306	1865360	55	2 [1]	[1] 2	USA300HOU_RS09260	hypothetical protein

TAAAAAATATTACCTTTTACTTCATCAGTCGTATATGAATTTGACAATTTTCTAACATTAAACAGAGACATTTCTCTTATTTGTTGTTCAGTTAACTTCAAATCCTCTAACATGCTTTCGTCAATTAGACGATATGATTTCCC  >  USA300TCH1516_ALE/1865165‑1865307                                                                                                                                             |   taaaaAATATTACCTTTTACTTCATCAGTCGTATATGAATTTGACAATTTTCTAACATTAAACAGAGACATTTCTCTTATTTGTTGTTCAGTTAACTTCAAATCCTCTAACATGCTTTCGTCAATTAGACGATATGATTTc    >  2:14809/1‑141 (MQ=255)   aaaaaTATTACCTTTTACTTCATCAGTCGTATATGAATTTGACAATTTTCTAACATTAAACAGAGACATTTCTCTTATTTGTTGTTCAGTTAACTTCAAATCCTCTAACATGCTTTCGTCAATTAGACGATATGATTTccc  >  1:25364/1‑141 (MQ=255)                                                                                                                                             |   TAAAAAATATTACCTTTTACTTCATCAGTCGTATATGAATTTGACAATTTTCTAACATTAAACAGAGACATTTCTCTTATTTGTTGTTCAGTTAACTTCAAATCCTCTAACATGCTTTCGTCAATTAGACGATATGATTTCCC  >  USA300TCH1516_ALE/1865165‑1865307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑