Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1876063	1876177	115	2 [1]	[1] 2	murJ_2	Lipid II flippase MurJ

TGCAAAACCAGCACTTAATGATGTCGGAATCATTACAATTTTATTAGTTGACATATTTAGCATATTAAAGAATATATCTTGTAACTGTGAAGGTATACCAACTAAAGATAAAGCACCGTTATGTGTAAATTGATCTACTAAGTTAAATAATGGATAATTCAAACTTACAATA  >  USA300TCH1516_ALE/1875922‑1876093                                                                                                                                             |                                tGCAAAACCAGCACTTAATGATGTCGGAATCATTACAATTTTATTAGTTGACATATTTAGCATATTAAAGAATATATCTTGTAACTGTGAAGGTATACCAACTAAAGATAAAGCACCGTTATGTGTAAATTGATCTACTaa                                 <  1:14627/141‑1 (MQ=255)                                aTTACAATTTTATTAGTTGACATATTTAGCATATTAAAGAATATATCTTGTAACTGTGAAGGTATACCAACTAAAGATAAAGCACCGTTATGTGTAAATTGATCTACTAAGTTAAATAATGGATAATTCAAACTTACAATa  >  1:1402/1‑141 (MQ=255)                                                                                                                                             |                                TGCAAAACCAGCACTTAATGATGTCGGAATCATTACAATTTTATTAGTTGACATATTTAGCATATTAAAGAATATATCTTGTAACTGTGAAGGTATACCAACTAAAGATAAAGCACCGTTATGTGTAAATTGATCTACTAAGTTAAATAATGGATAATTCAAACTTACAATA  >  USA300TCH1516_ALE/1875922‑1876093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑