Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1882791	1883047	257	2 [1]	[1] 2	ebh_2	Extracellular matrix‑binding protein ebh

CTAAAGCATGGTTGGTTGCTTGAGTTAATTCGTTCAATGCTGCATTTTTCTCTTCCTGAGTTGCTTCTCTATTACTATTTATTTGTTGTCTTTTCGTTGCTGTTGCTTGGTTAATTGCATCTCTTGCAGCTTTTTTATGAGTTACTTGAGGAACAACTGCTCCAATAGT  >  USA300TCH1516_ALE/1882650‑1882818                                                                                                                                             |                             cTAAAGCATGGTTGGTTGCTTGAGTTAATTCGTTCAATGCTGCATTTTTCTCTTCCTGAGTTGCTTCTCTATTACTATTTATTTGTTGTCTTTTCGTTGCTGTTGCTTGGTTAATTGCATCTCTTGCAGCTTTTTTATGAg                              <  2:21357/141‑1 (MQ=255)                             ttCGTTCAATGCTGCATTTTTCTCTTCCTGAGTTGCTTCTCTATTACTATTTATTTGTTGTCTTTTCGTTGCTGTTGCTTGGTTAATTGCATCTCTTGCAGCTTTTTTATGAGTTACTTGAGGAACAACTGCTCCAATAGt  >  1:40732/1‑141 (MQ=255)                                                                                                                                             |                             CTAAAGCATGGTTGGTTGCTTGAGTTAATTCGTTCAATGCTGCATTTTTCTCTTCCTGAGTTGCTTCTCTATTACTATTTATTTGTTGTCTTTTCGTTGCTGTTGCTTGGTTAATTGCATCTCTTGCAGCTTTTTTATGAGTTACTTGAGGAACAACTGCTCCAATAGT  >  USA300TCH1516_ALE/1882650‑1882818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑