Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1896179 1896364 186 2 [1] [1] 2 ribBA Riboflavin biosynthesis protein RibBA

CACCTTCAAGTAATCTTCCAGTGATAAAATCATTAAATCGACTAACTACGATTGCAACTTTCAAATCTTTTCCAATTAATTTACCTTCAAAATTCATGTTAAAATCCTCCTATATTAAATGACCCATTTTTATTTTTTTCGTTTCCATATAATCATGATTATGTACCGTTTCTGGTACGATAACTTCAATTCTTTCTGCAATATCAATGCCATATTGTTTTAATCCCTCAAATTTACTTGGATTATTA  >  USA300TCH1516_ALE/1896038‑1896285
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cACCTTCAAGTAATCTTCCAGTGATAAAATCATTAAATCGACTAACTACGATTGCAACTTTCAAATCTTTTCCAATTAATTTACCTTCAAAATTCATGTTAAAATCCTCCTATATTAAATGACCCATTTTTATTTTTTTCg                                                                                                             <  1:3039/141‑1 (MQ=255)
                                                                                                           tcctATATTAAATGACCCATTTTTATTTTTTTCGTTTCCATATAATCATGATTATGTACCGTTTCTGGTACGATAACTTCAATTCTTTCTGCAATATCAATGCCATATTGTTTTAATCCCTCAAATTTACTTGGAttatta  <  1:19121/141‑1 (MQ=255)
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CACCTTCAAGTAATCTTCCAGTGATAAAATCATTAAATCGACTAACTACGATTGCAACTTTCAAATCTTTTCCAATTAATTTACCTTCAAAATTCATGTTAAAATCCTCCTATATTAAATGACCCATTTTTATTTTTTTCGTTTCCATATAATCATGATTATGTACCGTTTCTGGTACGATAACTTCAATTCTTTCTGCAATATCAATGCCATATTGTTTTAATCCCTCAAATTTACTTGGATTATTA  >  USA300TCH1516_ALE/1896038‑1896285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: