Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2010185	2010217	33	2 [1]	[1] 2	USA300HOU_RS10125	Putative multidrug export ATP‑binding/permease protein

ATTAATTGCGGCAAAGGAATAGGCATTCCATCTTGTATGTTTCAACGCACGTGTTAGGAAATTAGTATTCTTTTTATCAAAGTTTTTCGCTTCATTGTCTTCAATCGCAAAACTTTTAACGACTGAAATACCTTGAACACGTTCATGCAAGAA  >  USA300TCH1516_ALE/2010044‑2010196                                                                                                                                             |             aTTAATTGCGGCAAAGGAATAGGCATTCCATCTTGTATGTTTCAACGCACGTGTTAGGAAATTAGTATTCTTTTTATCAAAGTTTTTCGCTTCATTGTCTTCAATCGCAAAACTTTTAACGACTGAAATACCTTGAACACg              >  1:44407/1‑141 (MQ=255)             aaaGGAATAGGCATTCCATCTTGTATGTTTCAACGCACGTGTTAGGAAATTAGTATTCTTTTTATCAAAGTTTTTCGCTTCATTGTCTTCAATCGCAAAACTTTTAACGACTGAAATACCTTGAACACGTTCATGCAAGaa  >  2:17956/1‑141 (MQ=255)                                                                                                                                             |             ATTAATTGCGGCAAAGGAATAGGCATTCCATCTTGTATGTTTCAACGCACGTGTTAGGAAATTAGTATTCTTTTTATCAAAGTTTTTCGCTTCATTGTCTTCAATCGCAAAACTTTTAACGACTGAAATACCTTGAACACGTTCATGCAAGAA  >  USA300TCH1516_ALE/2010044‑2010196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑