Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2035810	2035893	84	2 [1]	[0] 2	[polC_2]	[polC_2]

AGTCATTTATTTTTTAAACTACTAATGTTAATAACTCTAAATTTGATGTTGAATTAATTTGACGATTTTAAAGCATATCATCATTTACTTTTTAATCAGAGTTACATCCAAATGATAGATTTCACGTTATACCTTCACGTATAATATTATGTATCGTTTGTAAGCAAATGACTAAAAGTCTATTAATATATACATTTAATTAATTGAAAGGATT  >  USA300TCH1516_ALE/2035669‑2035882                                                                                                                                             |                                                                          aGTCATTTATTTTTTAAACTACTAATGTTAATAACTCTAAATTTGATGTTGAATTAATTTGACGATTTTAAAGCATATCATCATTTACTTTTTAATCAGAGTTACATCCAAATGATAGATTTCACGTTATACCTTCACGta                                                                           <  2:16320/141‑1 (MQ=255)                                                                          cATATCATCATTTACTTTTTAATCAGAGTTACATCCAAATGATAGATTTCACGTTATACCTTCACGTATAATATTATGTATCGTTTGTAAGCAAATGACTAAAAGTCTATTAATATATACATTTAATTAATTGAAAGGAtt  >  1:15258/1‑141 (MQ=255)                                                                                                                                             |                                                                          AGTCATTTATTTTTTAAACTACTAATGTTAATAACTCTAAATTTGATGTTGAATTAATTTGACGATTTTAAAGCATATCATCATTTACTTTTTAATCAGAGTTACATCCAAATGATAGATTTCACGTTATACCTTCACGTATAATATTATGTATCGTTTGTAAGCAAATGACTAAAAGTCTATTAATATATACATTTAATTAATTGAAAGGATT  >  USA300TCH1516_ALE/2035669‑2035882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑