Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2061578	2061666	89	2 [1]	[1] 2	nos	Nitric oxide synthase oxygenase

AAAGAAGTTACACGCTTAGCAAATCACTTAGGTTGGAAAGGAAAAGGTACTAATTTTGACGTGTTACCACTGATTTACCAATTACCTAATGAGTCAGTTAAATTTTACGAATATCCTACTTCATTAATTAAAGAAGTACCTATTGAACATAATCATTATCCAAAATT  >  USA300TCH1516_ALE/2061437‑2061603                                                                                                                                             |                           aaaGAAGTTACACGCTTAGCAAATCACTTAGGTTGGAAAGGAAAAGGTACTAATTTTGACGTGTTACCACTGATTTACCAATTACCTAATGAGTCAGTTAAATTTTACGAATATCCTACTTCATTAATTAAAGAAGTACCt                            <  1:45757/141‑1 (MQ=255)                           cTTAGGTTGGAAAGGAAAAGGTACTAATTTTGACGTGTTACCACTGATTTACCAATTACCTAATGAGTCAGTTAAATTTTACGAATATCCTACTTCATTAATTAAAGAAGTACCTATTGAACATAATCATTATCCAAAAtt  >  2:35330/1‑141 (MQ=255)                                                                                                                                             |                           AAAGAAGTTACACGCTTAGCAAATCACTTAGGTTGGAAAGGAAAAGGTACTAATTTTGACGTGTTACCACTGATTTACCAATTACCTAATGAGTCAGTTAAATTTTACGAATATCCTACTTCATTAATTAAAGAAGTACCTATTGAACATAATCATTATCCAAAATT  >  USA300TCH1516_ALE/2061437‑2061603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑