Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2118920	2119003	84	2 [1]	[1] 2	smc_4	Chromosome partition protein Smc

TTCGCTTATTTTGTCATCTATTCCTGAAACTTTATCTTGAATAGTTTTCCTGATGTTAGAGCGTTTTTGATTAATCTCATTTATCTCTAACATTACTGCTTTGTATTCGTCAGTTTGCGTAACGTCAACGTGAGTTGTTTTCAACTTATTAATTTTGTTTTGTATTCTTGCTGAACGCTCTTCTGCTTCGTTGATTTTAATTTG  >  USA300TCH1516_ALE/2118779‑2118982                                                                                                                                             |                                                                ttCGCTTATTTTGTCATCTATTCCTGAAACTTTATCTTGAATAGTTTTCCTGATGTTAGAGCGTTTTTGATTAATCTCATTTATCTCTAACATTACTGCTTTGTATTCGTCAGTTTGCGTAACGTCAACGTGAGTTGtttt                                                                 <  2:16096/141‑1 (MQ=255)                                                                tttttGATTAATCTCATTTATCTCTAACATTACTGCTTTGTATTCGTCAGTTTGCGTAACGTCAACGTGAGTTGTTTTCAACTTATTAATTTTGTTTTGTATTCTTGCTGAACGCTCTTCTGCTTCGTTGATTTTAATTTg  <  1:21850/141‑1 (MQ=255)                                                                                                                                             |                                                                TTCGCTTATTTTGTCATCTATTCCTGAAACTTTATCTTGAATAGTTTTCCTGATGTTAGAGCGTTTTTGATTAATCTCATTTATCTCTAACATTACTGCTTTGTATTCGTCAGTTTGCGTAACGTCAACGTGAGTTGTTTTCAACTTATTAATTTTGTTTTGTATTCTTGCTGAACGCTCTTCTGCTTCGTTGATTTTAATTTG  >  USA300TCH1516_ALE/2118779‑2118982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑