Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2130421	2130439	19	2 [1]	[1] 2	[USA300HOU_RS10870]	[USA300HOU_RS10870]

TAGTATCACCATCAAGATTCTTCTCAGAAACTTGTTTGATTTCAGAATTAATCTTTGCAAATGAAGTAGCTGGTAATACAGTGAAAGTAGTCGATAGTGCTAACGTACAAATTGTGATATTTTTACATAGTTGTTTAATCATTAGTAATC  >  USA300TCH1516_ALE/2130280‑2130429                                                                                                                                             |          tAGTATCACCATCAAGATTCTTCTCAGAAACTTGTTTGATTTCAGAATTAATCTTTGCAAATGAAGTAGCTGGTAATACAGTGAAAGTAGTCGATAGTGCTAACGTACAAATTGTGATATTTTTACATAGTTGTTTAATCa           <  2:28327/141‑1 (MQ=255)          cATCAAGATTCTTCTCAGAAACTTGTTTGATTTCAGAATTAATCTTTGCAAATGAAGTAGCTGGTAATACAGTGAAAGTAGTCGATAGTGCTAACGTACAAATTGTGATATTTTTACATAGTTGTTTAATCATTAGTAATc  <  2:11850/141‑1 (MQ=255)                                                                                                                                             |          TAGTATCACCATCAAGATTCTTCTCAGAAACTTGTTTGATTTCAGAATTAATCTTTGCAAATGAAGTAGCTGGTAATACAGTGAAAGTAGTCGATAGTGCTAACGTACAAATTGTGATATTTTTACATAGTTGTTTAATCATTAGTAATC  >  USA300TCH1516_ALE/2130280‑2130429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑