Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2231222	2231355	134	2 [1]	[1] 2	USA300HOU_RS11415	hypothetical protein

CTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTGAAAAGCGTATGTTGCCAAACTCCCTCCAGCATGTACATCTGGAACGA  >  USA300TCH1516_ALE/2231081‑2231298                                                                                                                                             |                                                                              cTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATg                                                                               <  2:43426/141‑1 (MQ=255)                                                                              catGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTGAAAAGCGTATGTTGCCAAACTCCCTCCAGCATGTACATCTGGAacga  >  1:27595/1‑141 (MQ=255)                                                                                                                                             |                                                                              CTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTGAAAAGCGTATGTTGCCAAACTCCCTCCAGCATGTACATCTGGAACGA  >  USA300TCH1516_ALE/2231081‑2231298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑