Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2267953	2268050	98	2 [1]	[1] 2	USA300HOU_RS11605/ywpJ_2	hypothetical protein/Phosphatase YwpJ

ATATATTTTCTTAATCTATCAGCAAGAGGTTATATTTCAAAGTGTTTATTTTTAAAACAACATCTAAAAGCCATTTTCATAATAATGTTAAATCATTAGAATGTATAAAGATTCCAATTAATAAAAATAGATAAAATGCAATAAAGTTCCAAATACTTATT  >  USA300TCH1516_ALE/2267812‑2267972                                                                                                                                             |                     atatatTTTCTTAATCTATCAGCAAGAGGTTATATTTCAAAGTGTTTATTTTTAAAACAACATCTAAAAGCCATTTTCATAATAATGTTAAATCATTAGAATGTATAAAGATTCCAATTAATAAAAATAGATAAAATGCaa                      <  1:50803/141‑1 (MQ=255)                     aGCAAGAGGTTATATTTCAAAGTGTTTATTTTTAAAACAACATCTAAAAGCCATTTTCATAATAATGTTAAATCATTAGAATGTATAATGATTCTAATTAATAAAAATAGATAAAATGTAATAAAGTTCCAAATACttatt  >  2:43147/1‑141 (MQ=255)                                                                                                                                             |                     ATATATTTTCTTAATCTATCAGCAAGAGGTTATATTTCAAAGTGTTTATTTTTAAAACAACATCTAAAAGCCATTTTCATAATAATGTTAAATCATTAGAATGTATAAAGATTCCAATTAATAAAAATAGATAAAATGCAATAAAGTTCCAAATACTTATT  >  USA300TCH1516_ALE/2267812‑2267972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑