Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	34539	34599	61	2 [1]	[1] 2	USA300HOU_RS00135	hypothetical protein

TAGCTTTGAGAAAATTCTTTCTGCAACTAAATATAGTAAATTACGGTAAAATATAAATAAGTACATATTGAAGAAAATGAGACATAATATATTTTATAATAGGAGGGAATTTCAAATGATAGACAACTTTATGCAGGTCCTTAAATTAATTAAAGAGAAA  >  USA300TCH1516_ALE/34398‑34557                                                                                                                                             |                    tAGCTTTGAGAAAATTCTTTCTGCAACTAAATATAGTAAATTACGGTAAAATATAAATAAGTACATATTGAAGAAAATGAGACATAATATATTTTATAATAGGAGGGAATTNCAAATGATAGACNACTTTATGCAGGTCCt                     <  1:64796/141‑1 (MQ=255)                    tctGCAACTAAATATAGTAAATTACGGTAAAATATAAATAAGTACATATTGAAGAAAATGAGACATAATATATTTTATAATAGGAGGGAATTTCAAATGATAGACAACTTTATGCAGGTCCTTAAATTAATTAAAGAGaaa  <  2:39833/141‑1 (MQ=255)                                                                                                                                             |                    TAGCTTTGAGAAAATTCTTTCTGCAACTAAATATAGTAAATTACGGTAAAATATAAATAAGTACATATTGAAGAAAATGAGACATAATATATTTTATAATAGGAGGGAATTTCAAATGATAGACAACTTTATGCAGGTCCTTAAATTAATTAAAGAGAAA  >  USA300TCH1516_ALE/34398‑34557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑