Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	43732	43759	28	2 [1]	[0] 2	USA300TCH1516_00035	hypothetical protein

TATGATTTTATTGGTTACCAATTCATGGTAGAGGGCTTTAGAATCCTCATTCATCTTTGATTCATGGTTTTGAATACTCTTTTTCCATACAAATGTATATCGATTGGCATTTGCTTCAATTTTTGTACCATCAATAAAAATAG  >  USA300TCH1516_ALE/43591‑43733                                                                                                                                             |   tATGATTTTATTGGTTACCAATTCATGGTAGAGGGCTTTAGAATCCTCATTCATCTTTGATTCATGGTTTTGAATACTCTTTTTCCATACAAATGTATATCGATTGGCATTTGCTTCAATTTTTGTACCATCAATAAAAAt    >  1:45654/1‑141 (MQ=255)   tGATTTTATTGGTTACCAATTCATGGTAGAGGGCTTTAGAATCCTCATTCATCTTTGATTCATGGTTTTGAATACTCTTTTTCCATACAAATGTATATCGATTGGCATTTGCTTCAATTTTTGTACCATCAATAAAAATAg  >  1:59362/1‑141 (MQ=255)                                                                                                                                             |   TATGATTTTATTGGTTACCAATTCATGGTAGAGGGCTTTAGAATCCTCATTCATCTTTGATTCATGGTTTTGAATACTCTTTTTCCATACAAATGTATATCGATTGGCATTTGCTTCAATTTTTGTACCATCAATAAAAATAG  >  USA300TCH1516_ALE/43591‑43733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑